Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0135 ATGGAGGAGCATGCGTTGCTTGAATGCTTGGAACTGGCCATGCCATGGCTAACCCCAGCAGAGCTAGCCACGCTCTCCTCCACCTGCAAAACCCTAAACCACATCTCCAAATCCATCACCTTCGCCAGAGCCTCCGACGCCTCCAGATCCTTCGAGAGCCTTCCAGTCCCCTTTGTCAACGCTTGCGACGCCCACCCCTACGCCTACTTCCACTACACTCCTTCTCAAATCCTCCCTTCCCAGTCCTCTCTTCTTCGACGCCAGCCATGGGGCTCCAACAACCAGAATAGCACCCTTCCACCCCCGGGTCTGATGCTCCCGTACACGGGCGAAGAAAGCGGGTGTGGGTGCGAGAGTTGTGGATGCGAGTGCCTGTGTGGGGGCTTTGTTGAGGGGTCGGAAGTGATGAGCGAGTGCGGGCCAGGTTGTGGTTGCGGGTTGAATTGCGAGAATCGGGTGACCCAGAGAGGGGTTTCGGTTGGGTTGAAGATTGTTAGAGATGAGAAGAAAGGGTGGGGTTTGCATGCTGCTCAATTTATTCCCAAAGGGCAGTTCGTCTGCGAGTATGCAGGTGAACTCTTGACAACTGAACAAGCAAGAAGGCGGCAACAAATATATGATGAACTTAGTTCAGGTGGTCGATTTTCTTCTGCTCTTTTGGTTGTGAGGGAGCATCTTCCATCTGGAAAAGCATGCCTGAGGATGAATATTGATGGAACAAGAATAGGGAATGTTGCTCGTTTCATCAACCATTCTTGTGATGGTGGCAATTTGTTGACAGTACTACTGAGAAGCTCAGGGGCCTTGTTACCTCGCCTTTGCTTTTTTGCCTCCAAAAATATACAAGAAGATGAAGAGCTCACTTTCAGCTATGGGGATATTAGGATCAGGGAAAAGGGCTTGCCTTGCTTCTGTGGCAGCTCTTGTTGTTTTGGAGTTCTGCCTTCGGAAAATACTTGA 960 0.5125 MEEHALLECLELAMPWLTPAELATLSSTCKTLNHISKSITFARASDASRSFESLPVPFVNACDAHPYAYFHYTPSQILPSQSSLLRRQPWGSNNQNSTLPPPGLMLPYTGEESGCGCESCGCECLCGGFVEGSEVMSECGPGCGCGLNCENRVTQRGVSVGLKIVRDEKKGWGLHAAQFIPKGQFVCEYAGELLTTEQARRRQQIYDELSSGGRFSSALLVVREHLPSGKACLRMNIDGTRIGNVARFINHSCDGGNLLTVLLRSSGALLPRLCFFASKNIQEDEELTFSYGDIRIREKGLPCFCGSSCCFGVLPSENT* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0135 319 ProSiteProfiles Post-SET domain profile. 299 315 IPR003616 -
Vvi8g0135 319 Gene3D SET domain 24 300 IPR046341 -
Vvi8g0135 319 ProSiteProfiles SET domain profile. 160 292 IPR001214 GO:0005515
Vvi8g0135 319 SMART shorttest3 110 159 IPR006560 GO:0005634|GO:0042054
Vvi8g0135 319 Pfam SET domain 171 292 IPR001214 GO:0005515
Vvi8g0135 319 SMART set_7 160 298 IPR001214 GO:0005515
Vvi8g0135 319 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 45 309 - -
Vvi8g0135 319 SUPERFAMILY SET domain 54 312 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0135 Vvi-Chr8 2654424 2659890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0135 138 314 C2H2 Transcription Factor Family AT2G23740 37.634 4.33e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi8g0135 SET 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0135 K11433 - vvi:100260473 624.78