Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0134 ATGGCTGATCCGCAAGGCGACGGCACCTTGGAAAGTCGCCGGAAGGGCGTGGGGAAGCGGCCTACCGGGATGGTGGAGGACGTGGTTGAGGCGGTCGCCGTCACATCTCTGTCGCCTGCGGCCCCTTGTGGGGCTTGCAAGTTCTTGAGGAGGAAGTGTGTTAGTGGGTGCATATTTGCACCCCACTTTGGATCCGACCAGGGCGCAGCCAGGTTTGCGGCCGTGCACAAGGTGTTCGGCGCCAGCAATGTGTCCAAGCTCTTATTACACATTCCCGTGAACCGGCGCCATGATGCCGTTGTTACCATATCTTATGAGGCTCAGGCGAGGCTGTCGGACCCGGTTTATGGCTGTGTCTCCACCATACTTGCTTTACAACAACAGGTGGCGTCGCTACAAGCGGAGCTCGCAATGGTGCAGGCACAGCTGATAAACAGTAGGTTTGCAGTGGCAAACGCCTTCCAGAACTCTCAGCAGCAGCAGCAGCATCAGATTGCAGTGCTGCAGCCGGCATACTCCAACAATTCAACTGCATCCAATAATCTCATCAATGTCGGCAGCTTCACCTCCAATTTTGACATTGCCTCAGAGACTGCTCCATCTTCCCACAGCTTGGAGCCTCTTCAACTTTCCCAGCCATCCCAAGATGAGGACGAAGACGAGGAAGAGAGTCAGAACCCAGTCATGTTCAGCAACGAGATACTTCATCGCCGATGA 717 0.5537 MADPQGDGTLESRRKGVGKRPTGMVEDVVEAVAVTSLSPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAMVQAQLINSRFAVANAFQNSQQQQQHQIAVLQPAYSNNSTASNNLINVGSFTSNFDIASETAPSSHSLEPLQLSQPSQDEDEDEEESQNPVMFSNEILHRR* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0134 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 40 222 - -
Vvi8g0134 238 MobiDBLite consensus disorder prediction 1 21 - -
Vvi8g0134 238 MobiDBLite consensus disorder prediction 198 212 - -
Vvi8g0134 238 ProSiteProfiles LOB domain profile. 41 143 IPR004883 -
Vvi8g0134 238 Coils Coil 122 142 - -
Vvi8g0134 238 Pfam Lateral organ boundaries (LOB) domain 42 140 IPR004883 -
Vvi8g0134 238 MobiDBLite consensus disorder prediction 198 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0134 Vvi-Chr8 2648162 2649017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0134 1 238 AS2 family AT3G03760 60.073 2.58e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi8g0134 LOB 5.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0134 - - vvi:100241627 419.468