Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0121 ATGGCAGCCTTCTCCTCCTCCATATCTCGACCCAGAAAAATCTCCCTCTTCCTTAACACATCCTTCCTTTTCCTCCTCTCATTTTGCTTGAAAATTCACTTCTATCCCTCCACCTCCAGTTTTCTTGATCAATCCAATGAGCATACCAAGGTTTTCTCTTACGCCCGGGGCCTGCGGATGAGCAGCGGCGGCTGCACCGGCATCCATGAATGCACCGACTATGAAGCCAAGTGTGCGTACGTGAAAACCCAGAATGGGTGTCTCCCGAATGGCTACATCAACTATCTTCACATCTTTTACTGCACTTGTGGCCGGTTTCCGGCGTGGGGTTATACCGTACTTCTGTTATGGCTTGCGGTATTGTTCTATCTGTTGGGGAACACAGCTGCGAATTACTTCTGTTCTTCCTTGGAAAACTTGTCAAGAGTGTTGAAACTGTCGCCTACTATCGCCGGAGTCACCCTCCTTTCACTTGGAAATGGGGCAGCCGACGTCTTTGCTAGTATCGTCTCCTTCACGCGGACCAGCGACGGCGATGTCGGCCTGAATATCGTCTTGGGCGGGGCGTTTTTCGTGTCGAGCGTGGTGGTTGGAATTATTAGTATTTTCATCGGCCCTCGTCAGATTTCAGTTGATAAGCCCAGCTTCATCAGAGATGTCATCTTCTTCCTCATAGCTCTTGCCTCTCTTCTTGTGATCATAATTATCGGAAAAGTTAGCTTCTGGGGCTCAGTTTGTTTCGTTTCAATCTACTTTTTCTATGTATGTGCTGTTTCCACAACACACATCCTCTGGAAAAGGGAAGAAAGCGTAGTGGATCTATACGACATTTCTCCGGATTCAAGGAGCTTCTTTCTGCGCAGCCACGACGAACTGGGGGAGAATGGGACTCCATTACTGGGTTATGTTGATGAGGAGAAGCCCAATTTAGCCGAAAGACGAGATCCCGAAGGCGAGAAACAATCGAAAAGGTTCTGGAATCCTGATTCATCGACCTGTTATTACTGGGGTTGGTTTCTGTATGTATTAGAGTTTCCGCTTTACTTGCCAAGAAGACTTACCATACCTGTCGTCAGCGAAGAGAGATGGTCTAAGCTATATGCAGTTATTTCAGTTACCTTGGCGCCACTTCTATTAGCAGCTCTTTGGAACACCCAAAGGGGAAGCGCCGGCTCCAAATCCAGCATCATAACATTCATGATTGCAGGTCTGATTGGGGTGATATTTGGGAATCTTGCCTTTGTTGCCACCAAGAAATCGAGCCCACCAAAGAGATGCTTGTTCCCATGGCTGGCCGGAGGGTTTCTAATGAGCGTGACATGGACATATATCATTGCCGAGGAATTAGTCTCTTTGCTGGTTTCATTTGGGAATATACTCGGCATAAGCCCTGCAGTTCTCGGCCTAACAGTCTTAGCTTGGGGCAACTCGCTCGGAGACCTAATAGCCAATGTGGCTCTGGCGGCCAACGGTGGACAAGACGGTGTCCAGATCGCTGTATCAGGGTGCTACGCAGGCGCCATGTTCAACACACTGGTGGGGTTGGGCTTGTCAATGGTGTTCTCAGCTTGGCATGAATATCCAGCTCCTTACATCATCCCTATCGACCCTTCTCTCTATGAGACAGTAGGGTTTTTGATGAGTGGCTTGCTTTGGGCCCTTGTAATATTGCCAAACAAGAATATGAAGCCGGACCGGTTTCTGGGAATAGGGCTCTTGGCCATATATGTTTGTTTTTTGTTTCTAAGGGTGGCCAGGACTGTTGGCCTATTGAAACTTTAA 1782 0.4815 MAAFSSSISRPRKISLFLNTSFLFLLSFCLKIHFYPSTSSFLDQSNEHTKVFSYARGLRMSSGGCTGIHECTDYEAKCAYVKTQNGCLPNGYINYLHIFYCTCGRFPAWGYTVLLLWLAVLFYLLGNTAANYFCSSLENLSRVLKLSPTIAGVTLLSLGNGAADVFASIVSFTRTSDGDVGLNIVLGGAFFVSSVVVGIISIFIGPRQISVDKPSFIRDVIFFLIALASLLVIIIIGKVSFWGSVCFVSIYFFYVCAVSTTHILWKREESVVDLYDISPDSRSFFLRSHDELGENGTPLLGYVDEEKPNLAERRDPEGEKQSKRFWNPDSSTCYYWGWFLYVLEFPLYLPRRLTIPVVSEERWSKLYAVISVTLAPLLLAALWNTQRGSAGSKSSIITFMIAGLIGVIFGNLAFVATKKSSPPKRCLFPWLAGGFLMSVTWTYIIAEELVSLLVSFGNILGISPAVLGLTVLAWGNSLGDLIANVALAANGGQDGVQIAVSGCYAGAMFNTLVGLGLSMVFSAWHEYPAPYIIPIDPSLYETVGFLMSGLLWALVILPNKNMKPDRFLGIGLLAIYVCFLFLRVARTVGLLKL* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0121 593 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 28 592 - -
Vvi8g0121 593 Pfam Sodium/calcium exchanger protein 115 257 IPR004837 GO:0016020|GO:0055085
Vvi8g0121 593 Pfam Sodium/calcium exchanger protein 431 583 IPR004837 GO:0016020|GO:0055085
Vvi8g0121 593 Gene3D - 366 585 IPR044880 -
Vvi8g0121 593 Gene3D - 146 275 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0121 Vvi-Chr8 2369266 2371047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0121 53 592 Antiporters AT5G17860 52.757 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0121 K13754 - vvi:100246655 1159.82