Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0117 ATGGACATCTTCTTCGAACCCTTCAGTGGGGAGGGATTCTGCATTGAAGTTGGTTTTTTTGACACAGTTCTTGAGATCAAAGAGAAGATTCAAAAGTACCAAAACATCCCAGTTGCAGCACAAACCCTAATCTTCAATGGCGAGGTTCTTCAAGATGAATCCAATGTTCATTCCAGTGACTTAGTCCACAACTCTTACATACAGCTCATCAGCAGCTGCCCGGAAAAACCAGCAACCAAGGCCGAGAGCTCACCGCCACTGTCCCCGGCGGCCAGCAGAGTCCAGCTCTTGATAAACATTCCAACGTCAAAGTCACAGCAGTTCCCTCTTTGCATGCACAGCAGAGGCACCATAAGAGAGTTGAAGGAGAACATCCATGCAGTCATGGAAACGCTATGTGTTCAACAGTTGGTGCTGTATTCAGATGGCTCAGAGTTGCAGGATCATTGGTCTTTGCATCAGTCTGGGCTTTCGGATGGTTCGGAGATCGATGTCGGGTTTATGGCTGGTGCAATGGGGAGTAGTTGCTTTAAGAAGCTGAAGGTGATGGTGGTGCTGCCAAGATGTGGAGGAAAGAAAACTGCAGTTGAAGTGAACGGGTCAGACAAAGTGAGAGTGCTGAGGATGGAACTGGACAAGTTGCAGAAGTGCCTTCAATTTTATCTCCCTAAGGATGGCTACTACTTCATATACAAGGAGCATGTGATGGACGAGGATCGGTCCTTTCGATGGCACCATGTTGGCCAAGGTGATACCATAGACATCTCCCCTACAAGTATAAGCACCCATTGGCCATGA 798 0.4774 MDIFFEPFSGEGFCIEVGFFDTVLEIKEKIQKYQNIPVAAQTLIFNGEVLQDESNVHSSDLVHNSYIQLISSCPEKPATKAESSPPLSPAASRVQLLINIPTSKSQQFPLCMHSRGTIRELKENIHAVMETLCVQQLVLYSDGSELQDHWSLHQSGLSDGSEIDVGFMAGAMGSSCFKKLKVMVVLPRCGGKKTAVEVNGSDKVRVLRMELDKLQKCLQFYLPKDGYYFIYKEHVMDEDRSFRWHHVGQGDTIDISPTSISTHWP* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0117 265 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vvi8g0117 265 Gene3D - 96 167 - -
Vvi8g0117 265 FunFam Ubiquitin-like superfamily protein 1 71 - -
Vvi8g0117 265 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Vvi8g0117 265 SMART ubq_7 1 72 IPR000626 GO:0005515
Vvi8g0117 265 SMART ubq_7 94 168 IPR000626 GO:0005515
Vvi8g0117 265 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 86 - -
Vvi8g0117 265 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Vvi8g0117 265 Pfam Ubiquitin family 4 69 IPR000626 GO:0005515
Vvi8g0117 265 Pfam Ubiquitin family 98 164 IPR000626 GO:0005515
Vvi8g0117 265 SUPERFAMILY Ubiquitin-like 183 255 IPR029071 -
Vvi8g0117 265 CDD Ubl_ubiquitin_like 98 165 - -
Vvi8g0117 265 ProSiteProfiles Ubiquitin domain profile. 94 165 IPR000626 GO:0005515
Vvi8g0117 265 SUPERFAMILY Ubiquitin-like 73 165 IPR029071 -
Vvi8g0117 265 Gene3D - 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0117 Vvi-Chr8 2197337 2198134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0117 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 1.02e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0117 - - vvi:100243370 534.643