Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0110 ATGGCAAAAGGATTCTGCCATTGGGCACTCCTGGTTCTGGTTTTGATTTTGGGTTCAATCCGCCCTTCAGAGCAGCTCCCGTCCTCCCAGGCTCAGACCCTTATCAGAATTCAGGGAATTTTGAACTTCCCAGCCATTTTAAGCAGCTGGAATAACAATACTGACTTCTGTGACACTGAACCAAGTTCATCTCTTACTGTTGTATGCTATGAAGAAAGCATAACCCAGCTGCATATTATTGGACACAAGGGGGTTCCTCCATTGCCTAGGAATTTCTCCATAGATTCCTTCATAACGACGCTGGTTAAGCTTCCAAGCTTGAAGGTTCTCACATTAGTTTCTCTCGGTTTATGGGGTCCCATGCCTAGTAAAATAGCACGATTGTCATCCCTTGAAATACTCAACATAAGTTCAAATTACTTTTATGGTACAATTCCTGAGGAGATTGCATATTTAACAAGCCTCCAAACACTTATACTAGATGACAATATGTTCATTGGTGAACTTTCTGATTGGCTGAGCTTGCTACCTGTTTTGGCTGTTTTGAGTTTGAAGAAGAATTCATTTAATGGGTCATTGCCAAGTTCATTGGGAAGTTTGGAAAATCTCAGAATTCTTACTCTTTCTCATAATCGCTTCTATGGAGAAGTGCCTGATCTTAGCAGTTTGGACAACCTTCAAGTTCTTGACTTGGAAGATAACGCTCTTGGACCTCAGTTTCCTCGACTTGGCACCAAGTTGGTTACCCTTGTATTGAAAAAGAACAGGTTTAGTTCTGGGATTCCTGTTGAAGTAAGCTCCTATTATCAACTTGAACGGTTGGATATCTCTTACAATCGATTTGCAGGACCATTTCCACCATCATTGTTAGCTCTTCCCTCTGTTACTTATCTGAATATTGCAGGAAACAAATTCACTGGAATGCTTTTTGGATATCAATCCTGCAATGCTGGGCTTGAATTTGTGGATTTGTCCTCAAATCTCTTGACTGGAAACTTGCCCAATTGTCTCAAGTCGGATTCTAAGAAGAGGGTTGTCCTCTATGGTAGGAATTGTTTGGCAACTGGAGAGCAAAATCAACATCCATTCTCCTTTTGTCGTAATGAGGCTTTAGCTGTTGGAATCATACCTCACCGAAAGAAACAAAAAGGAGCTTCTAAAGCTGTTCTTGCGTTGGGCACAATTGGAGGAATTCTTGGAGGAATTGCACTTTTTTGTCTAGTTTTCTTGGTTGTTAGAAGAGTAAATGCCAAAAAAGCAACAAAAACACCCCCTACCAAATTAATAGCCGAGAATGCATCAACTGTGTACTCCTCAAAGTTGTTTTCTGATGCAAGGTATGTATCTCAAACAATGAATCTGGGAGCCCTTGGCCTTCCAGCTTACCGGACATTTTCACTGGAAGAGCTTGAGGAGGCTACAAATAACTTTGATACATCAACTTTCATGGGTGAAGGTTCTCAAGGTCAGATGTACAGAGGTAAGCTGAAGGACGGTTCCCTTGTTGCTATTAGGTGCCTAAAAATGAAAAAGAGCCACAGCACCCAAAACTTTATGCACCACATAGAGCTGATTTTAAAGCTCAGACATCGCCATTTGGTCAGTTCTCTTGGACACTGCTTTGAGTGTTACTTGGATGATGCAAGCGTCAGCAGAATTTTTCTCATATTTGAATACGTCCCCAATGGGACTCTGAGGAGCTGGATATCTGAGGGACGTTCCAGACAAACACTTTCTTGGACACAACGCATAGCAGCTGCCATAGGGGTAGCAAAGGGTATCGAATTTCTGCATACCGGAATTCTGCCTGGTGTATATTCAAATAATCTGAAAATAACAGATATTTTACTGGATCAGAACCTTGTTGCAAAAATTAGCAGCTACAACCTGCCTTTGCTAGCAGAGAATATGGGAAAGGTTAGCAGTGGAATTTCCTCAGGTGGTTCCAAAGAATTCAGTGTCAATGCCAGGGTACAGCATGAGGACAAAATTGATATTTATGACTTTGGAGTGATATTGCTTGAGCTCATCATGGGAAGGCCGTTCAATTCCACGAATGAAGTGGATGTCATAAGAAATTGGTTACAAGCATGCGTAACAGCAGACGATGCATCCAGAAGAAACATGGTGGATGCTGCAGTTCACAGGACTTGCTCGGATGAATCACTGAAGACAATGATGGAGATCTGCATCAGATGCCTGCATAAGGACCCAGCAGAGAGACCATCCATAGAGGATGTGCTGTGGAACTTGCAGTTTGCTGCTCAGGTTGAGGATGCATTGAGGGGAGACTCTGACAGCAGTGATGGTTCCCCTGCTTTCCCTTCCTTGCCTCCACGCCTACGTCTCAACATTCATTAA 2361 0.4257 MAKGFCHWALLVLVLILGSIRPSEQLPSSQAQTLIRIQGILNFPAILSSWNNNTDFCDTEPSSSLTVVCYEESITQLHIIGHKGVPPLPRNFSIDSFITTLVKLPSLKVLTLVSLGLWGPMPSKIARLSSLEILNISSNYFYGTIPEEIAYLTSLQTLILDDNMFIGELSDWLSLLPVLAVLSLKKNSFNGSLPSSLGSLENLRILTLSHNRFYGEVPDLSSLDNLQVLDLEDNALGPQFPRLGTKLVTLVLKKNRFSSGIPVEVSSYYQLERLDISYNRFAGPFPPSLLALPSVTYLNIAGNKFTGMLFGYQSCNAGLEFVDLSSNLLTGNLPNCLKSDSKKRVVLYGRNCLATGEQNQHPFSFCRNEALAVGIIPHRKKQKGASKAVLALGTIGGILGGIALFCLVFLVVRRVNAKKATKTPPTKLIAENASTVYSSKLFSDARYVSQTMNLGALGLPAYRTFSLEELEEATNNFDTSTFMGEGSQGQMYRGKLKDGSLVAIRCLKMKKSHSTQNFMHHIELILKLRHRHLVSSLGHCFECYLDDASVSRIFLIFEYVPNGTLRSWISEGRSRQTLSWTQRIAAAIGVAKGIEFLHTGILPGVYSNNLKITDILLDQNLVAKISSYNLPLLAENMGKVSSGISSGGSKEFSVNARVQHEDKIDIYDFGVILLELIMGRPFNSTNEVDVIRNWLQACVTADDASRRNMVDAAVHRTCSDESLKTMMEICIRCLHKDPAERPSIEDVLWNLQFAAQVEDALRGDSDSSDGSPAFPSLPPRLRLNIH* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0110 786 Gene3D Transferase(Phosphotransferase) domain 1 560 768 - -
Vvi8g0110 786 SUPERFAMILY L domain-like 101 353 - -
Vvi8g0110 786 Gene3D Ribonuclease Inhibitor 244 361 IPR032675 -
Vvi8g0110 786 Gene3D Phosphorylase Kinase; domain 1 449 559 - -
Vvi8g0110 786 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 560 767 - -
Vvi8g0110 786 SUPERFAMILY Protein kinase-like (PK-like) 459 753 IPR011009 -
Vvi8g0110 786 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 89 751 - -
Vvi8g0110 786 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 244 - -
Vvi8g0110 786 Pfam Protein kinase domain 480 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0110 786 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 450 559 - -
Vvi8g0110 786 ProSiteProfiles Protein kinase domain profile. 477 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0110 786 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 245 362 - -
Vvi8g0110 786 ProSiteProfiles Leucine-rich repeat profile. 202 224 IPR001611 GO:0005515
Vvi8g0110 786 Gene3D Ribonuclease Inhibitor 27 243 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0110 Vvi-Chr8 2032342 2036706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0110 43 785 Miscellaneous Gene Families AT3G03770 65.688 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vvi8g0110 Pkinase 2.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0110 - - vvi:100243272 1504.96