Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0106 ATGGTGTGGTGTACAAACTGTGCAAGAGATTGTCGTACAGAGCGCCTTTTGAATGGCTACTTATGTTGTACTGCATGTGGGAAGGTTGTTGATCAGGACAACTTTTCGAATGATCCGGTGTTTGTTAAAAATGCAGCAGGACAGAGCCAAATGTCAGGAAATTTTGTAAAAACGGTTCAAAGTGACTACTCTGCCTCACGTGAAAGAACACTTAATGATGCTTATGCTGAGATAGGTCATATAGCAAATGCTATAGGTGTAAGTGGTGGAGATTCAATAATTCGCCCTGCTTTGGCCTTTTATACAATAGCACTGGAGCGGAATTTCACTAGGGGGCGCAGAAAAGAACAAGTTGCTGCAGCTTGTCTTTATATTGCATGTAGGGAAAATAAAAAGCCATTTCTTCTTATTGATTTTTCAGAACACTTAAGGATAAATGTTTATGTGCTGGGTGCTGTATTTTTGCAGCTTTGTAAACTGCTAAGTCTTGAAGAGCATCCCATCGTTCAAAAACCTGTTGACCCTAGCCTTTTTATTCATAGATTTGCGGCTGGTTTACCGGGAGAAACAAATATGGGGGTCTCCAAAACTGCCCTACGCATTATTGCCAGCATGAAGCGCGATTGGTTGCAGACAGGGAGAAAACCCAGTGGCTTATGTGGTGCAGCGTTGTACATATCTGCACTTTCATATGGTTTAAAGTGCTCCAAGACAGACATTGTGAAGATCGTACATATTTGTGAAGCAACTTTAACAAAGCGCTTGATTGAATTTGAGAATACAGAGTCTGGGAGCTTAACGATTGAGGAGTTCAACATGAAGGCTGAGGAGCTTGAAAAGGAATATAGTTCAACCAAGCAATCTAATATTGGTTCAACTGTACCTGGAAAGGGTGAACTACTTTGTGAACATAAGGGTAGTGGAAAGCCTCCTTTTGCCCATGGACTTTGTGAAATTTGTTATGGTGAATTCATAAAACTTTCTGGAGGACTTGAAGGAGGATCAGAACCCCCAGCTTTCCAGCGTGCAGAAAGAGACAGAATGGCAAAAGCAGCTGCTGAGGAAAATGCTGATTCAAATCAAATTCAGCTTGATAAAGGATCGAGCAGCCCAGATGTGTGTGGGAATGAATCGTCAAAGTTAGCAGAGCCTAAAAGTATTGGGGCCAGTGATAAGCAAGCAAGCATTGATGAGGGTGCTCCTAGTGACCTACATGGAGCTGATGATGAGAATGCTAATGCTGGTGATGAATCGGAAAGCCTTTCTGATATTGATGATGTAGAGGTTGATGGCTATCTTCACAATGAGAAGGAGAAGCAATTTAAAAAGATTATTTGGGAAGCAATGAACAAGGAGTACCTTGAGGAACAAGCAGCTAAGGAAGCAGCTGCAGCAGCTGCCAAGGAGGCCTATGAGGCCAGTTTCAAGGATAATCCAGAGGGCTTAAAAGCTGCACAGGAACTTGCTGCAGCTACTGCAGCAGCTGTGGCAAAATCAAGAAAGGAAAGGCAGCAGAAACGTGCTGCAGAAGCAAAAAATACGGTTCCTGCTCAGACTGCTGCAGAAGCTACACGGCAAATGCTAACTAAGAAGAGACTTAGTTCAAAAATCAACTATGATGTATTGGAGAAACTTTTTGACGATTCTGTGCCTTCAGAAAACCCCAAGAAAATTCGGACTGAATCACAAACTGAGAATAATGACCACAAAGCCCCCATCAGCAACAAAAAGCTTGAGCCAGAGGAAGATGACTTGGCACCAGAGGATGAATTTGGATATGAGGGGGATACTGGAGGACTGTATGGCAATGATTTGTATGGGGAAGGATATGATTATGATGACGATTATGGTGATGATGGATACTACTAA 1869 0.4254 MVWCTNCARDCRTERLLNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTVQSDYSASRERTLNDAYAEIGHIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAAACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIHRFAAGLPGETNMGVSKTALRIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDIVKIVHICEATLTKRLIEFENTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGELLCEHKGSGKPPFAHGLCEICYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSNQIQLDKGSSSPDVCGNESSKLAEPKSIGASDKQASIDEGAPSDLHGADDENANAGDESESLSDIDDVEVDGYLHNEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASFKDNPEGLKAAQELAAATAAAVAKSRKERQQKRAAEAKNTVPAQTAAEATRQMLTKKRLSSKINYDVLEKLFDDSVPSENPKKIRTESQTENNDHKAPISNKKLEPEEDDLAPEDEFGYEGDTGGLYGNDLYGEGYDYDDDYGDDGYY* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0106 622 CDD CYCLIN_TFIIIB90_rpt2 171 261 - -
Vvi8g0106 622 MobiDBLite consensus disorder prediction 339 353 - -
Vvi8g0106 622 PRINTS Transcription initiation factor IIB signature 214 230 IPR000812 GO:0006352|GO:0070897
Vvi8g0106 622 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Vvi8g0106 622 PRINTS Transcription initiation factor IIB signature 120 139 IPR000812 GO:0006352|GO:0070897
Vvi8g0106 622 MobiDBLite consensus disorder prediction 608 622 - -
Vvi8g0106 622 FunFam Transcription factor IIIB 90 kDa subunit 63 167 - -
Vvi8g0106 622 FunFam Transcription factor IIIB subunit 174 263 - -
Vvi8g0106 622 CDD CYCLIN_TFIIIB90_rpt1 70 161 - -
Vvi8g0106 622 Coils Coil 494 514 - -
Vvi8g0106 622 Gene3D Single helix bin 414 464 - -
Vvi8g0106 622 MobiDBLite consensus disorder prediction 545 582 - -
Vvi8g0106 622 MobiDBLite consensus disorder prediction 332 422 - -
Vvi8g0106 622 MobiDBLite consensus disorder prediction 495 526 - -
Vvi8g0106 622 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 537 IPR000812 GO:0006352|GO:0070897
Vvi8g0106 622 Coils Coil 268 288 - -
Vvi8g0106 622 FunFam Cyclin/Brf1-like TBP-binding protein 414 464 - -
Vvi8g0106 622 MobiDBLite consensus disorder prediction 545 622 - -
Vvi8g0106 622 Pfam Brf1-like TBP-binding domain 422 547 IPR011665 -
Vvi8g0106 622 SUPERFAMILY Cyclin-like 73 164 IPR036915 -
Vvi8g0106 622 Gene3D - 174 263 - -
Vvi8g0106 622 MobiDBLite consensus disorder prediction 356 376 - -
Vvi8g0106 622 Gene3D - 63 166 - -
Vvi8g0106 622 Pfam Transcription factor TFIIB repeat 170 260 IPR013150 GO:0017025
Vvi8g0106 622 Pfam Transcription factor TFIIB repeat 68 158 IPR013150 GO:0017025
Vvi8g0106 622 SUPERFAMILY Cyclin-like 173 266 IPR036915 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0106 1 531 Inorganic Solute Cotransporters AT2G01280 42.243 5.85e-111 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0106 K15196 - vvi:100263800 1143.64