Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0103 ATGGAAGATCGAGGGCAAGACCATGGCTTGGAGAGAAATGAACCAGTGAGGTCAAGGTGGACTCCAAAGCCTGAGCAAATAATCATACTTGAGTCCATCTTCAACAGTGGTATGGTAAATCCTCCCAAAGATGAAACTGTGAGGATAAGAAAATTGCTGGAGCCTTATGGTTCTGTTGGGGATGCAAATGTCTTCTACTGGTTCCAAAACAGAAGATCGAGATCTAGACGTCGGCAGCGCCAGATTCAGGCCAGCCTTGCTGGAGATCGAGGAGCTCAGGCACATGCTGGTGGTGCAATTCACTATCAAAGTAACCTGATGCCGCCTTCTGCTTTTGTTCCGTCTTCATCTTCTTGCCTCGTCGGTTCCTCTTCATCATGCGGTGGTATGAACGATGATGGTGTCGATAATCTCTTTTCATTCTCCGGTCAAGTGGGTCTCCAGGAAATGGAGAACAGCTCTGGTGTAACATCAACCTTGTGCCCTTCAAACACCTCCAATTTGCACTACCAATCTGGATGTGTTACGGTGTTCATCAATGGGGTTCCAACTGAGGTTCCAAAGGGGTCATTTGACATGAAAGCTATGTTTGGCCAAGATTTCGTGTTGGTCCATTCCTCGGGAGTGCCTGTTCCTTTCAATGAATTTGGCTTCTCAATGCAGAGCTTGCAACATGGTGAAAGCTATTTCCTGGTAAGCATAGCTAGGTAG 711 0.4698 MEDRGQDHGLERNEPVRSRWTPKPEQIIILESIFNSGMVNPPKDETVRIRKLLEPYGSVGDANVFYWFQNRRSRSRRRQRQIQASLAGDRGAQAHAGGAIHYQSNLMPPSAFVPSSSSCLVGSSSSCGGMNDDGVDNLFSFSGQVGLQEMENSSGVTSTLCPSNTSNLHYQSGCVTVFINGVPTEVPKGSFDMKAMFGQDFVLVHSSGVPVPFNEFGFSMQSLQHGESYFLVSIAR* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0103 236 SMART HOX_1 15 82 IPR001356 GO:0003677
Vvi8g0103 236 PANTHER WUSCHEL-RELATED HOMEOBOX 11 6 233 IPR044558 GO:0003700|GO:0048830
Vvi8g0103 236 Pfam Homeodomain 17 77 IPR001356 GO:0003677
Vvi8g0103 236 Gene3D - 17 84 - -
Vvi8g0103 236 FunFam WUSCHEL-related homeobox 11 17 84 - -
Vvi8g0103 236 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Vvi8g0103 236 SUPERFAMILY Homeodomain-like 13 84 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0103 Vvi-Chr8 1900037 1901212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0103 14 234 Wox Gene Family AT3G03660 50.593 7.66e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi8g0103 Homeodomain 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0103 - - vvi:100246660 458.759