Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0102 ATGAGTCTTGTGGAAAACCCAAGTGGTGGTGGTGGGAATTCAGATGTGATGCTTTCCCTCTCTTCTGGCTATTCAGAAGAGAATGAGTTCATGGGCTCTGACAAGGGAGGTGAGATTCTGACCCCTCACCCACTAGAAGGAGAGGAAAATGATAGATCAGTTGAGGGTAGTGATGGGTGTTTTGGGGATGAGAAAATGGAGGAGGTTAATGGTTTCGGTCCAGGTGAGGAAGAGGAAGGAGAAGATAGTGAGCAGAACTCTGGTGAAGTGAAAAGTGGGCAAAACAAGGTCTGTGTCAGAGGCCATTGGAGGCCACATGAGGATGCCAAGCTGAGAGAGGCTGTTGCCCAACATGGTCCCCAGAACTGGAACTTGATTGCCGAGAAGCTTGTTGGAAGATCAGGAAAGAGCTGTAGATTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGGAGGGCTTTCAGTGGAGAAGAAGAAGATAGACTCTTGGCTGCACATAGACTTTATGGCAACAAATGGGCTATGATTGCCAGGGCCTTTCCTGGGAGGACTGATAATGCTGTGAAGAACCATTGGCATGTGATCATGGCCAGAAGGCACAGAGCTCAGTCTAGTATCTACAGAAGGAGAAAGCCCTCTTTTTCTTCTTCTGCTTCTTCTCCTTTTTCTCAGACTCTCCTCCCTAGAGGTTTGGATATGATTATGACTCACCCCAATTCCTCTCAGACCATCCCTATGGGCTTAAGTATAATCAATCACCCATCTTATTCTCCCTCTTATTCTTCTCATTTGATCACTCATCAACCCATTCCAAGGGGTTTGGATGTGGTTACTCACCAAAACAATGCAGGAAGTGAATCAACCATCACCAGCACCATCGATGAATCTGCTTCATCTGGCACTGATCTCTCCCTCAAAGCCTACTCCAACAGGGCTGATCTTCCAGGGATTTTCACTAATTATACTCCTGCTATGCAGCAGCAGCTTCATCTCATTGGGTTGGACTTGCAGATGGGCCTGCCTGGGGTGTATGAGAAGCCCAATGGCTTATACCGAGCTGGTAATTCAGATTCAAACTCAGAAGCCTCTGCAACCTCAGCTGCCAACACCCGGAACAATCACTATCTGCATGGAGAAAATGAAAATGGGAATGGGAATAAGGACTACAACACACCCTTCATTGATTTCCTTGGAGTGGGAGCCACTTGA 1212 0.4711 MSLVENPSGGGGNSDVMLSLSSGYSEENEFMGSDKGGEILTPHPLEGEENDRSVEGSDGCFGDEKMEEVNGFGPGEEEEGEDSEQNSGEVKSGQNKVCVRGHWRPHEDAKLREAVAQHGPQNWNLIAEKLVGRSGKSCRLRWFNQLDPRINRRAFSGEEEDRLLAAHRLYGNKWAMIARAFPGRTDNAVKNHWHVIMARRHRAQSSIYRRRKPSFSSSASSPFSQTLLPRGLDMIMTHPNSSQTIPMGLSIINHPSYSPSYSSHLITHQPIPRGLDVVTHQNNAGSESTITSTIDESASSGTDLSLKAYSNRADLPGIFTNYTPAMQQQLHLIGLDLQMGLPGVYEKPNGLYRAGNSDSNSEASATSAANTRNNHYLHGENENGNGNKDYNTPFIDFLGVGAT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0102 403 MobiDBLite consensus disorder prediction 41 72 - -
Vvi8g0102 403 CDD SANT 103 144 IPR001005 -
Vvi8g0102 403 MobiDBLite consensus disorder prediction 1 96 - -
Vvi8g0102 403 Gene3D - 154 220 - -
Vvi8g0102 403 ProSiteProfiles Myb-like domain profile. 100 146 IPR001005 -
Vvi8g0102 403 Gene3D - 99 151 - -
Vvi8g0102 403 CDD SANT 154 194 IPR001005 -
Vvi8g0102 403 FunFam MYB transcription factor 100 151 - -
Vvi8g0102 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 150 IPR017930 -
Vvi8g0102 403 ProSiteProfiles Myb-like domain profile. 147 197 IPR001005 -
Vvi8g0102 403 Pfam Myb-like DNA-binding domain 152 195 IPR001005 -
Vvi8g0102 403 Pfam Myb-like DNA-binding domain 100 146 IPR001005 -
Vvi8g0102 403 PANTHER MYB PROTEIN-RELATED 100 285 - -
Vvi8g0102 403 SUPERFAMILY Homeodomain-like 99 193 IPR009057 -
Vvi8g0102 403 SMART sant 99 148 IPR001005 -
Vvi8g0102 403 SMART sant 151 199 IPR001005 -
Vvi8g0102 403 MobiDBLite consensus disorder prediction 1 28 - -
Vvi8g0102 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 201 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0102 Vvi-Chr8 1864492 1865922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0102 100 212 MYB Transcription Factor Family AT1G69560 84.071 1.56e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi8g0102 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0102 K09422 - vvi:100245102 745.732