Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0096 ATGAGAAACTCTTTTGCAACAACTCGTCATTATAGCCCATCTAACAGAAGGTCTGGCATGTCATCTCCCTCCATGTTTGTTGAAGAACAAGACCAGAAGACCCTTCAACTCAGTCATGATCTGAAGGACAAGAAGCACAAGGAGCAAAAGAATGCGGCGGTCTTCCCTGAGAAAGCTTTGTCGTACAAGGAGAAGAATGTCATATACAAAGAATGCAGGAAAAACCATGCGGCAAGTATCGGCGGCTATGCTGTAGATGGCTGCAGAGAATTCATGGCTGCCGGAGAAGAAGGAACCAGTGCCTCATTCAAGTGTGCTGCTTGCAGTTGCCACAGGAACTTCCATAGAAAGGAGGTTGAGAGTGAATGCTTTTGTGACTGTTCTTCAATATCTACCACTCTGAAATGA 408 0.4534 MRNSFATTRHYSPSNRRSGMSSPSMFVEEQDQKTLQLSHDLKDKKHKEQKNAAVFPEKALSYKEKNVIYKECRKNHAASIGGYAVDGCREFMAAGEEGTSASFKCAACSCHRNFHRKEVESECFCDCSSISTTLK* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0096 135 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 118 IPR006456 -
Vvi8g0096 135 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 119 IPR006456 -
Vvi8g0096 135 MobiDBLite consensus disorder prediction 1 33 - -
Vvi8g0096 135 Pfam ZF-HD protein dimerisation region 66 119 IPR006456 -
Vvi8g0096 135 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 122 - -
Vvi8g0096 135 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0096 Vvi-Chr8 1728325 1728732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0096 65 133 Zinc finger-homeobox gene family AT3G28917 65.714 2.88e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi8g0096 ZF-HD_dimer 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0096 - - vvi:104879963 282.337