LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0082	ATGAGTAGTCGAAAGGAAGAAGAGAGGAATGAGAAGATCATCCGAGGCCTCATGAAGCTGCCTCCGAATCGAAGATGCATCAACTGCAACAGCTTAGGTCCTCAGTATGTCTGTACAAATTTTTGGACTTTTGTTTGTACCACTTGTAGTGGGATACATCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAGCGTGCAAGGGAATTATATTTGAAAGATTGGGATACACAGAGGCAGAGATTGCCTGATATCAGTAATGTTGATAAAGTACGGGATTTCATTAAGAGTGTCTATGTGGATAGAAGATATGCTGTAGGAAAGACCTCTGACAAGCCTCCGAGAGATACACAGAACCTGAGAGACCGTGATGAGGAGACAAGACGAGCCAGTTCATATCACTCTTATTCCCAAAGTCCACCTTATGATTATCAATATGAAGATCGACGGTATGGAAAGCAAGCTGCTGTGCTTACTAGGAAACCTGGTTCAGACCGAGGCCTCTATGATGGGAAGATCTCAAGTTTTGTTTACAGTCCTGGTCGCTTAAGTGATCAAATGTATGAGGATCGGTTTGCAAATGATGGCTCTGGTGATCCATTCAGGTCCAATATCCAGTCACCAAATTTTCAGAAGGGCATTGGATTCAGCAGTCCTCCTATTCATCCTTCAAGGGATATCTTAATTGGAGATGCACAGCAACAAACAATAAATACCGTTGTGGAGGAAAACTCCAGGAGAGATGGGTTTCAACGTCCACAGAGAACTACATCTTCTGGAAGCTTTGGATCATTTGATAGCAACTCCATGTCTATCAAGTCAGCTAATTCCAGTAATTTAATGGATGTTGTCTCAGAACCTGAGCAATCTACTGGTGGGGCACACCAGGATAAAATATCTGAGCTTCATGCATTACCGCGATCATCTGTTTCTGGATATCCTGTCAGCTTGGACCTTTTTGATGCACCCTTTGCACCAGAAACTGTGACTTCTTCAGCTTCATCTATTGATTTGTTTCAGTTACCTGTGACATCATCAGTTCCATCTGTTGATTTATTTCAACAATCCTCAGTTTCTTCAGTTTCATCCATGAATCCTCATCAAGCTTCCCAGACTTCACCACCTTCGGCTTTTGACTTCTTTGCTGAGATTAATCAGCAGCAGTCGGCAGCCACCTTGCATCAAAAGTTGCCAGAATTATCTGTCCCAAAAAATGAAGGTTGGGCTACATTTGATACACCTACACCCATGACATCTATTGCAGGTACGACTGAAAATTGTACCCCTGCAAAAATACCTTCTACTGATGGAGGTCCTCCAGGAAAGTTGGACTCAGTTTTATCCATAGATGCAAGCATGCAGTGGCCACTATTTCAAGATTCTAATGCTCATGGTCCTTCTTCATCAATGTCTAATCCATGGGATCAGGGTCTACATAATGTTCAAGCCTCCGCTAATGTGACCAGTACCCCGTTATGGAATGCTTTTGAAGATGCTATTGGACATCTTTCGTTGGGAAGCATTCAACAAAGTAGTGAACCACATGTTGCAGTATCCAAGCCTTCAACCGCTGATCAGTTTTTAGGCTCAAGAGTTTTAGAGGACCCTGATAATGATGGGATTCAAAGAGCTGCTTCGGCTGGTGGCCCTTCTCTTCCTAGTGTACCAACTCATGTCACTGGCCCGCCTGATGCACCATCAGAGCTTGCCCTTATGGGAGGAACACAATCACAAGGAACTGATAAAAAATCTTCTAACCCATTTGATCTTCCATATGATTCTGATTTGGAACAGAGCAGTATGTTCTTGGACATGAGCTCTCTCCAAGCGGCCCTGCCATCAAATCCTCAGTTGCCATCTGTATTCCTTGGTGGTGTAACTCAACCATGGTTTCCTCAAAAACCAGTCACACCTTATATCCCAGCTGCACCTCAAGGGGGCTTAGCGTATGTGGCAGGATCAACACCAAGCTCCCAATTACCGAATGGCCAAACACAAGGCCCTGTTGCTTCTATTGGAGGAAACCCTTTCGCATAG	2088	0.4401	MSSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHRVKSVSMAKFTSQEVEALQKGGNQRARELYLKDWDTQRQRLPDISNVDKVRDFIKSVYVDRRYAVGKTSDKPPRDTQNLRDRDEETRRASSYHSYSQSPPYDYQYEDRRYGKQAAVLTRKPGSDRGLYDGKISSFVYSPGRLSDQMYEDRFANDGSGDPFRSNIQSPNFQKGIGFSSPPIHPSRDILIGDAQQQTINTVVEENSRRDGFQRPQRTTSSGSFGSFDSNSMSIKSANSSNLMDVVSEPEQSTGGAHQDKISELHALPRSSVSGYPVSLDLFDAPFAPETVTSSASSIDLFQLPVTSSVPSVDLFQQSSVSSVSSMNPHQASQTSPPSAFDFFAEINQQQSAATLHQKLPELSVPKNEGWATFDTPTPMTSIAGTTENCTPAKIPSTDGGPPGKLDSVLSIDASMQWPLFQDSNAHGPSSSMSNPWDQGLHNVQASANVTSTPLWNAFEDAIGHLSLGSIQQSSEPHVAVSKPSTADQFLGSRVLEDPDNDGIQRAASAGGPSLPSVPTHVTGPPDAPSELALMGGTQSQGTDKKSSNPFDLPYDSDLEQSSMFLDMSSLQAALPSNPQLPSVFLGGVTQPWFPQKPVTPYIPAAPQGGLAYVAGSTPSSQLPNGQTQGPVASIGGNPFA*	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0082	695	MobiDBLite	consensus disorder prediction	268	313	-	-
	Vvi8g0082	695	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	11	130	IPR001164	GO:0005096
	Vvi8g0082	695	MobiDBLite	consensus disorder prediction	258	314	-	-
	Vvi8g0082	695	Pfam	Putative GTPase activating protein for Arf	12	122	IPR001164	GO:0005096
	Vvi8g0082	695	MobiDBLite	consensus disorder prediction	123	148	-	-
	Vvi8g0082	695	MobiDBLite	consensus disorder prediction	588	610	-	-
	Vvi8g0082	695	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	123	IPR037278	-
	Vvi8g0082	695	MobiDBLite	consensus disorder prediction	548	610	-	-
	Vvi8g0082	695	SMART	arf_gap_3	11	130	IPR001164	GO:0005096
	Vvi8g0082	695	MobiDBLite	consensus disorder prediction	670	688	-	-
	Vvi8g0082	695	PANTHER	ARFGAP/RECO-RELATED	1	695	IPR044820	GO:0005096
	Vvi8g0082	695	Gene3D	Arf GTPase activating protein	1	130	IPR038508	-
	Vvi8g0082	695	CDD	ArfGap_AGFG	11	123	-	-
	Vvi8g0082	695	PRINTS	HIV Rev interacting protein signature	23	42	IPR001164	GO:0005096
	Vvi8g0082	695	PRINTS	HIV Rev interacting protein signature	60	81	IPR001164	GO:0005096
	Vvi8g0082	695	PRINTS	HIV Rev interacting protein signature	42	59	IPR001164	GO:0005096
	Vvi8g0082	695	MobiDBLite	consensus disorder prediction	670	695	-	-
	Vvi8g0082	695	MobiDBLite	consensus disorder prediction	123	164	-	-
	Vvi8g0082	695	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0082	Vvi-Chr8	1409107	1427059	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0082	14	116	C2H2 Transcription Factor Family	AT4G05330	33.333	1.62e-11	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0082	K15044		-	vvi:100255407	1360.51