Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi8g0061 | ATGGTGAAGAAGCGAAAGCTCGAGCCCAAAATCGTCGAGCCACCACCACCGCAAGAGGTTGAAGAGGAAGCAGAGGAGATAGAAGAAGACGAAGAAGTTGAAGAGGAAGAGTACGAAGAGGTCGAAGAGGAAGAGGACGAAGAAGAGGAGGAGGGTGGTGGCACTCAGAATGCTGCGAAGAAATCTGCGTCGACGTCCGCCGTTGACGACGACGACGACGAGGAGCCGATTCAGAAGATTTTGGAGCCGTTCAGCAAGGATCAGTTGATCAATTTGCTTCGTGAAGCTGCGGAGAAGCATGCGGATGTGGCGGAGAGGTTGAGGAGGGTGGCCGATGAGGATCCGGTGCATAGGAAGATCTTCGTGCACGGGCTTGGGTGGGACACGAATGCGGAAACCCTTATTAGTGTGTTCAAAGACTACGGTGAGATCGAGGATTGCAGAGCGGTGTGCGATAAGCTGTCTGGGAAATCGAAGGGGTATGGGTTCATTCTGTTCAAGACTCGGAGCGGGGCTCGGAAGGCGCTGAAGCAGCCGCAGAAAAAGATTGGGAACCGAATGACAGCGTGCCAGCTTGCTTCGATTGGTCCAGTGCCGTCTCCGGCGGTGGGGCAAGCTGCCATGTCTGTATCGGCAGCCCAGTCGGTGTCGGAGTATACACAGAGGAAGATATATGTGAGCAATGTGGGAGCGGAGTTGGATCCGCAGAAGTTGTTGGTGTTCTTTTCGAAGTATGGAGAGATTGAGGAGGGGCCGTTAGGGCTAGATAAGCAGACAGGTAAGCCAAAGGGGTTCTGTCTTTTCGTGTACAAAACGGCGGAGGGTGCAAAGAAGGCATTGGATGAGCCGCACAAGAACTTTGATGGGCATATTTTGCATTGCCAGAAGGCCATTGATGGTCCGAAACCGGGTAAACAACAACAGCTACAGCAGCAGCAGCATCACCATAACCTGCCGAACACCCACTACACAAAGAGTGAAATCACTAATTTTATGGGGCCTCAAGGGCATCTCATGGCCCCATCGGGGCCACCTGCTATACCCTATAATCAGGGGTCTGCAGCACAAGCTCTCAACCCTGCGCTAGGGCAAGCTTTGACAGCATTGCTTGCGACTCAGGGTGCTGGGTTGGGCCTGACCAACCTGCTTGGCACGCTGGGTTCAGCTAGTGTTGGGGCGGCAGTGAACCCGAGTGTGGCTGGTGCAGGACATGGAATGCAGGGTGGGTATCCAAACCAGGCGGTGGCTGGTAATATTAGCTCAGGAATGGTTGGAGGTTATGGGAGTCAGGGGGCCTATGGGAACCAGCAAATGGGGCAGGGAAGTTCGAGTGGTAGGTCGCAGCATGGTGTTGGGCACATGGGCGGCATGGCTCCTTACATGGGTCATTAG | 1392 | 0.5431 | MVKKRKLEPKIVEPPPPQEVEEEAEEIEEDEEVEEEEYEEVEEEEDEEEEEGGGTQNAAKKSASTSAVDDDDDEEPIQKILEPFSKDQLINLLREAAEKHADVAERLRRVADEDPVHRKIFVHGLGWDTNAETLISVFKDYGEIEDCRAVCDKLSGKSKGYGFILFKTRSGARKALKQPQKKIGNRMTACQLASIGPVPSPAVGQAAMSVSAAQSVSEYTQRKIYVSNVGAELDPQKLLVFFSKYGEIEEGPLGLDKQTGKPKGFCLFVYKTAEGAKKALDEPHKNFDGHILHCQKAIDGPKPGKQQQLQQQQHHHNLPNTHYTKSEITNFMGPQGHLMAPSGPPAIPYNQGSAAQALNPALGQALTALLATQGAGLGLTNLLGTLGSASVGAAVNPSVAGAGHGMQGGYPNQAVAGNISSGMVGGYGSQGAYGNQQMGQGSSSGRSQHGVGHMGGMAPYMGH* | 464 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi8g0061 | 463 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 18 | 314 | - | - | |
| Vvi8g0061 | 463 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 118 | 215 | IPR000504 | GO:0003723 | |
| Vvi8g0061 | 463 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Vvi8g0061 | 463 | MobiDBLite | consensus disorder prediction | 18 | 52 | - | - | |
| Vvi8g0061 | 463 | MobiDBLite | consensus disorder prediction | 434 | 449 | - | - | |
| Vvi8g0061 | 463 | Gene3D | - | 214 | 327 | IPR012677 | - | |
| Vvi8g0061 | 463 | SMART | rrm1_1 | 119 | 191 | IPR000504 | GO:0003723 | |
| Vvi8g0061 | 463 | SMART | rrm1_1 | 223 | 295 | IPR000504 | GO:0003723 | |
| Vvi8g0061 | 463 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Vvi8g0061 | 463 | MobiDBLite | consensus disorder prediction | 434 | 463 | - | - | |
| Vvi8g0061 | 463 | Gene3D | - | 18 | 197 | IPR012677 | - | |
| Vvi8g0061 | 463 | Coils | Coil | 86 | 113 | - | - | |
| Vvi8g0061 | 463 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 222 | 314 | IPR000504 | GO:0003723 | |
| Vvi8g0061 | 463 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 317 | IPR035979 | GO:0003676 | |
| Vvi8g0061 | 463 | SUPERFAMILY | RNA-binding domain, RBD | 117 | 200 | IPR035979 | GO:0003676 | |
| Vvi8g0061 | 463 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 224 | 292 | IPR000504 | GO:0003723 | |
| Vvi8g0061 | 463 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 120 | 186 | IPR000504 | GO:0003723 | |
| Vvi8g0061 | 463 | Coils | Coil | 17 | 51 | - | - | |
| Vvi8g0061 | 463 | FunFam | UBP1-associated protein 2A | 209 | 338 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi8g0061 | Vvi-Chr8 | 971862 | 973253 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi8g0061 | 221 | 309 | C2H2 Transcription Factor Family | AT2G19380 | 38.889 | 2.82e-12 | 67.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi8g0061 | K12741 | - | vvi:100243393 | 740.725 |