Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0050 ATGGCCTGTTCTGTTAGTCACTGTTTTCCTCACCGTATTAACAAAGAAAGTCTTAACATACGCAGCCTGCTTGACAACAACAATTTGTCAGGGTATCTTCCACCAGAGCTTTCTCAAATGCCGAAACTGAAGATTCTTCAACTTGACAACAACAACTTTGGTGGGACTGAGATTCCAGAATCATATGGCAACATGTCCAAACTGTTGAAACTGAGTCTTAGGAACTGCAACTTGCAAGGAAGTATTCCCAATCTAAGCAGGATACCAAACCTTCATTACTTAGATCTTAGCCATAATCAACTTACGGGAAGTATACCATCAAATAGGCTTTCCAATAACATCACAACCATTGACCTGTCCAGTAATATGCTTAGCGGATCTATCCCCTCAAGCTTTTCGGGCCTTCCTCATCTTGAGAGATTGTCACTCGAGAACAATTTGTTGAATGGTTCCATTAGCTCTGCCATTTGGGAGAATGTGACTTTTGCTGCTAATGCAACACTTACCTTGGATTTCCAGAACAATTCATTTTCAAACATTTCTGGCAGTTTTGTTCCTCCTTCAAATGTCACAATCAAGCTAAATGGTAATCCTCTCTGTACAAATGCAAATGCACTAAACATCGTCCAATTCTGTGGAACTGCAAATGGAGAGGATGAGGCTCCTGGAAGCCCAGACAACTCCAACATTACCTGCCCGTCTCAATCCTGTCCTCTCAATGATCATTTCGAATATGTCCCCGGATCTCCTGTTTCTTGCTATTGTGCCGCACCACTCGGAGTTGGATTTCGCTTGAGAAGTCCTAGCATATCAGATTTTCCTCCATACACTGATCAATTTAAGGCATATATAACCTCCAATCTTGGTTTGGTTCCTTACCAACTACACATTGATTCATTCATATGGCAAAAGGGTCCGAGGCTAAGGATGTATTTGAAGTTCTTTCCCCAGTATAATAATCAATCTAATACATTTAACACAAGTGAAATACAGCGGATTAGAGACTTAATCACCACATTTACAATTCCTGGGGATGATATCTTTGGCCCATATGATCTGCTTAATTTCACTCTTGTGGGACCTTATTCAGACGTTGATCTCGAGTCCAAAAAATCAGGTATAAGCAAAGGTGTTATTGTTGGAATTGTTTTGGGTGGCCTCTCCTTCGCAACTGCCATAGTTTTGGTCATTGCAGTTGTGTTCTGGAAAAAGCAGACTCGACATGGGCATAAAGATTCAAAACAACAACCATTTTCAAAGACTGCAGTGATAATAGAAGGTGTGAAAGGATTTAGTTTTGGAGAAATGGAAATTGCTACTGAAAATTTTAGTGAAGCTACTCAAATTGGCCAAGGAGGCTATGGGAAGGTATATAAAGGCATTTTAGCAGATGGAACAGTTGTAGCAATAAAGCGTGCACAACAAGGATCTTTGCAGGGTGAGAAAGAGTTCTTTACTGAGATTGGATTGTTGTCACGATTACATCATCGTAATCTGGTTTCATTGATTGGGTATTGCGATGAAGAACAGGAACAGATGCTTGTATATGAATTCATGCCGCATGGTTCACTGCACAGTCTCCTTTCTGCTAGGTCCAGAGGAACTCTTACTTTTGTGACAAGATTGCATATTGCATTATGTTCAGCCAAGGGTGTTCTCTACCTCCATACTGAAGCTTACCCTCCCATAATTCATCGTGATATCAAGGCGAACAATATACTTTTGGACTCTAAATTCAATGCAAAAGTGTCTGATTTTGGAATCTCATGTCTTGTACCAGTATCAGATGGTGAAGAAGGTGCCACTGCTCATGTATCCACTGTTGTGAAAGGCACACCAGGCTACCTTGATCCAGAGTATTTCTTTACTCACAAGTTAACAGAAAAGAGCGATGTTTATAGCCTGGGAATTGTATTTCTAGAATTGTTGACCGGGATGCAGCCTATATCTCAAGGTAGAAACATTGTCCGAGAGGTAACTGCAGCATGTCAATCTGGAGCAATGTTCTCAATCATAGACCAGAACATGGGTCCATTTCCTTCTGACTGTGTCAAGGAGTTCATGACACTGGCCCTCAGATGCAGTCAGGATTTGACGAAGGATCGGCCTTCAATGCTGGAGGTGGTCAGAGAGTTGGAGAACATATCCTCAATGCTACCGCAAGCTGGACATGGTCGATCAAAGTCAGACACCTCTGCTTCTGGAATATCAGTAATGGGCACCACAGCAGTCTATCCTGGAAGAAACTCCTATGTTTCTGGTTTCCCCGGGAGCGATCTCGTCAGTGGGAGATTTCCTTCTTTATTTTATTTTTTGGGAGGGGGGTTTTTTTGTTTCTTCACTGCACTGCGAGCTGTCAAGAAAAGGTTAATTGATCCTATGAAGAATATTAGAAATTGGGGAAAGGGAGATCCATGTACGTCCAAGTGGAAAGGCATTATTTGTAAAGATAAAAACACAACAGATGGATACTTGCATGTTAATGCGCTCCTGCTGCTGAAAATGAATCTATCTGGAACTTTAGCACCTGAACTTGGCCAACTATCTCATCTTGAAATTATAGATTTCTTGTGGAATGACTTAAGTGGCAGTATACCAAAGGAGATAGGAAACATTGCACCTCTGAGACTCTTGCTCTTGAGTGGAAACAGATTGTCGGGCTCTTTACCTGATGAGCTTGGTTATCTTTTACATTTAGATAGACTCCAAATAGATGAGAATCACATATCAGGACCAGTTCCAAAATCATTTGCAAACTTGAGCAGAATTAAACATCTCCACATGAACAATAACTCACTCAGTGGTCGAATTCCTTCTGAGCTTTCCAATGCATCAACTCTTCGTCACTTGCTTTTCGACAATAATAACTTGTCTGGGAATCTTCCACCAGAATTGTCACACCTCCCAGAACTGCGCATACTTCAACTTGATAACAACAACTTCAGTGGAGCTGAAATTCCAATTTCTTATGGGAACCTGTCCAATTTGGTAAAATTAAGTCTTAGAAATTGCAGCTTGCAGGGAGCTGTCCCTGATTTCAGCAAGATAGCGAACCTAAGCTATTTTGATCTTTCAGGCAACCATCTCAATGGGTCTATCCAGGAAAGTTTCTCAGATCTTCCTCGGCTACAGAAACTGTTACTTGAGAATAATTTATTGAGTGGTTCTGTGCCCACTGGCATTTGGCAGAACAGATCCTTAAGTACATCAGCTAAACTTACAGTTGATCTCCAGAACAATTCATTCTCGAACATCACAGGTGATCTAAATCCCCCAGCAAATGTCACCCTATGGCTCCAGGGCAATCCTATATGCAGTAATGCAAACATAGTAAACATTCACCTATTCTGTGGATCTGAATCTGGAGGGGAAGAGAATCCTGAAAGTTCAACAAATTCAACAGATAATTGTCGTATTCAAGAATGTCTCACAGACGATTTCTTTGAATATGTTCCAGCATCCCCTATCCCGTGCTTTTGTGCTTCACCTCTTCGAGTAGGATATCGGCTGAAAAGTCCTAGCTTCTCTTATTTCATTCCATATGAATCTCCATTTGAAAAGTATGTAACCAGTGTCCTCAACATGGAGCTGTATCAATTACACATTGATTCATTTTTCTGGGAAGAAGGGCCTCGTCTGAGGATGCATTTTAAGCTTTTTCCAACATACAATAATCACACATTCAATACAAGTGAGGTTCTGCGAATTAGAGGCATCTTTGCATCATGGGACTTTCCTAGCAATGACTTTTTTGGACCATATGAGCTTCTCAGCTTCCCTCTCCTGGGACCTTATTCAGGCATTGATTCTGCGACTCATGGAAAAAGTCTTAGCATGGGTATATGGGTTGCAATTTTATTAGGAGCCATTGCCTGCGCCATTGCAATTTCGATAACTGTTACACTTCTTATTGTAAGAAGACATTCTAAATACCAGAATACTGTGTCAAGAAGGCGCTTGTCCTCAACAATTTCTATGAAAATTGATGGTGTGAGAGACTTCACTTATAGAGAAATGGCTCTAGCTACTGACAATTTCAATGACTCAACTCAAGTTGGTCAAGGAGGTTATGGAAGAGTTTATAAGGGAATTTTATACGACAACACAGTTGTGGCAATAAAACGAGCACAGGAAGGATCCTTACAGGGTCAAAAGGAATTCTTGACTGAGATTCAGTTGTTGTCAAGGTTGCATCACAGGAACCTAGTTTCCTTGATTGGATACTGTGCCGAAGAAGGGGAACAGATGTTGGTTTACGAGTTCATGCCCAATGGAACCTTGCGGGACTGGCTTTCTGCTAAATCTAAAACCCTGATATTCAGTACGAGGTTACGCATTGCACTTGGTTCAGCCAAGGGCATTCTTTACCTCCATACTGAAGCGCAGCCTCCCATATTCCACCGAGATATCAAAGCCAGCAACATACTTCTGGATTCTAAGTTTACACCTAAAGTTGCTGATTTTGGACTCTCACGGCTTGCACCAGACCTAGAAGATGAAGGGGCTGTGCCTAATCATGTATCCACCATTGTGAAGGGAACACCGGGTTACCTCGACCCAGAATACTTCTTGACCCGTAAGTTGACAGATAAAAGTGATGTGTATAGCCTTGGAGTTGTATTTCTGGAGATCTTAACGGGTATGCAGCCAATATCGCATGGCAAAAACATTGTCCGTGAGGTGAATATGTCTCATCAGCTGGGCATGGTGTTCTCCATCATAGACAACAAAATGGGTTCCTACCCTTCTGAATGTGTCGAGAGGTTCTTAGCTTTAGCTCTTAGGTGTTGCCATGACAAGCCAGAGGATCGGCCATCTATGTTAGACGTGGTAAGGGAGCTGGAAAACATACTGCGAATGATGCCTGAAATCGAAACCCAGTCCTCAGAATCTGCATCACATTCTGGGAAGTTGCTGTCGCTGCCCTCTTCATCCTATGTGAGCAGGGACTTATATTCAATATCAAATGCGTCAGGAAGTGATCTTGTCAGCGGTGTCATTCCCACCATTGCACCTCGATAA 5022 0.4186 MACSVSHCFPHRINKESLNIRSLLDNNNLSGYLPPELSQMPKLKILQLDNNNFGGTEIPESYGNMSKLLKLSLRNCNLQGSIPNLSRIPNLHYLDLSHNQLTGSIPSNRLSNNITTIDLSSNMLSGSIPSSFSGLPHLERLSLENNLLNGSISSAIWENVTFAANATLTLDFQNNSFSNISGSFVPPSNVTIKLNGNPLCTNANALNIVQFCGTANGEDEAPGSPDNSNITCPSQSCPLNDHFEYVPGSPVSCYCAAPLGVGFRLRSPSISDFPPYTDQFKAYITSNLGLVPYQLHIDSFIWQKGPRLRMYLKFFPQYNNQSNTFNTSEIQRIRDLITTFTIPGDDIFGPYDLLNFTLVGPYSDVDLESKKSGISKGVIVGIVLGGLSFATAIVLVIAVVFWKKQTRHGHKDSKQQPFSKTAVIIEGVKGFSFGEMEIATENFSEATQIGQGGYGKVYKGILADGTVVAIKRAQQGSLQGEKEFFTEIGLLSRLHHRNLVSLIGYCDEEQEQMLVYEFMPHGSLHSLLSARSRGTLTFVTRLHIALCSAKGVLYLHTEAYPPIIHRDIKANNILLDSKFNAKVSDFGISCLVPVSDGEEGATAHVSTVVKGTPGYLDPEYFFTHKLTEKSDVYSLGIVFLELLTGMQPISQGRNIVREVTAACQSGAMFSIIDQNMGPFPSDCVKEFMTLALRCSQDLTKDRPSMLEVVRELENISSMLPQAGHGRSKSDTSASGISVMGTTAVYPGRNSYVSGFPGSDLVSGRFPSLFYFLGGGFFCFFTALRAVKKRLIDPMKNIRNWGKGDPCTSKWKGIICKDKNTTDGYLHVNALLLLKMNLSGTLAPELGQLSHLEIIDFLWNDLSGSIPKEIGNIAPLRLLLLSGNRLSGSLPDELGYLLHLDRLQIDENHISGPVPKSFANLSRIKHLHMNNNSLSGRIPSELSNASTLRHLLFDNNNLSGNLPPELSHLPELRILQLDNNNFSGAEIPISYGNLSNLVKLSLRNCSLQGAVPDFSKIANLSYFDLSGNHLNGSIQESFSDLPRLQKLLLENNLLSGSVPTGIWQNRSLSTSAKLTVDLQNNSFSNITGDLNPPANVTLWLQGNPICSNANIVNIHLFCGSESGGEENPESSTNSTDNCRIQECLTDDFFEYVPASPIPCFCASPLRVGYRLKSPSFSYFIPYESPFEKYVTSVLNMELYQLHIDSFFWEEGPRLRMHFKLFPTYNNHTFNTSEVLRIRGIFASWDFPSNDFFGPYELLSFPLLGPYSGIDSATHGKSLSMGIWVAILLGAIACAIAISITVTLLIVRRHSKYQNTVSRRRLSSTISMKIDGVRDFTYREMALATDNFNDSTQVGQGGYGRVYKGILYDNTVVAIKRAQEGSLQGQKEFLTEIQLLSRLHHRNLVSLIGYCAEEGEQMLVYEFMPNGTLRDWLSAKSKTLIFSTRLRIALGSAKGILYLHTEAQPPIFHRDIKASNILLDSKFTPKVADFGLSRLAPDLEDEGAVPNHVSTIVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLEILTGMQPISHGKNIVREVNMSHQLGMVFSIIDNKMGSYPSECVERFLALALRCCHDKPEDRPSMLDVVRELENILRMMPEIETQSSESASHSGKLLSLPSSSYVSRDLYSISNASGSDLVSGVIPTIAPR* 1674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0050 1673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1465 1477 IPR008271 GO:0004672|GO:0006468
Vvi8g0050 1673 ProSitePatterns Protein kinases ATP-binding region signature. 1352 1374 IPR017441 GO:0005524
Vvi8g0050 1673 Gene3D Ribonuclease Inhibitor 939 1145 IPR032675 -
Vvi8g0050 1673 Pfam Leucine rich repeat 994 1053 IPR001611 GO:0005515
Vvi8g0050 1673 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515
Vvi8g0050 1673 FunFam Leucine-rich repeat protein kinase family protein 1310 1421 - -
Vvi8g0050 1673 PANTHER RECEPTOR-LIKE PROTEIN 55 792 1617 - -
Vvi8g0050 1673 ProSiteProfiles Protein kinase domain profile. 1346 1618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0050 1673 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 1422 1631 - -
Vvi8g0050 1673 CDD STKc_IRAK 1352 1617 - -
Vvi8g0050 1673 ProSiteProfiles Protein kinase domain profile. 443 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0050 1673 ProSitePatterns Protein kinases ATP-binding region signature. 449 471 IPR017441 GO:0005524
Vvi8g0050 1673 Pfam Protein tyrosine and serine/threonine kinase 1350 1614 IPR001245 GO:0004672|GO:0006468
Vvi8g0050 1673 Pfam Protein kinase domain 444 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0050 1673 SUPERFAMILY Protein kinase-like (PK-like) 429 720 IPR011009 -
Vvi8g0050 1673 Gene3D Ribonuclease Inhibitor 108 256 IPR032675 -
Vvi8g0050 1673 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 779 938 - -
Vvi8g0050 1673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Vvi8g0050 1673 SMART serkin_6 1346 1621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0050 1673 SMART serkin_6 443 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0050 1673 SMART LRR_typ_2 920 944 IPR003591 -
Vvi8g0050 1673 SMART LRR_typ_2 88 112 IPR003591 -
Vvi8g0050 1673 SMART LRR_typ_2 40 65 IPR003591 -
Vvi8g0050 1673 SMART LRR_typ_2 1040 1064 IPR003591 -
Vvi8g0050 1673 SMART LRR_typ_2 968 991 IPR003591 -
Vvi8g0050 1673 SMART LRR_typ_2 993 1015 IPR003591 -
Vvi8g0050 1673 SMART LRR_typ_2 135 159 IPR003591 -
Vvi8g0050 1673 Gene3D Transferase(Phosphotransferase) domain 1 1422 1636 - -
Vvi8g0050 1673 Gene3D Transferase(Phosphotransferase) domain 1 519 731 - -
Vvi8g0050 1673 Gene3D Ribonuclease Inhibitor 7 107 IPR032675 -
Vvi8g0050 1673 Gene3D Ribonuclease Inhibitor 780 938 IPR032675 -
Vvi8g0050 1673 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 519 729 - -
Vvi8g0050 1673 CDD STKc_IRAK 449 715 - -
Vvi8g0050 1673 SUPERFAMILY Protein kinase-like (PK-like) 1332 1644 IPR011009 -
Vvi8g0050 1673 Pfam Leucine rich repeat N-terminal domain 782 815 IPR013210 -
Vvi8g0050 1673 SUPERFAMILY L domain-like 781 1061 - -
Vvi8g0050 1673 Gene3D Phosphorylase Kinase; domain 1 403 518 - -
Vvi8g0050 1673 FunFam Leucine-rich repeat protein kinase family protein 406 518 - -
Vvi8g0050 1673 ProSiteProfiles Leucine-rich repeat profile. 90 112 IPR001611 GO:0005515
Vvi8g0050 1673 Gene3D Phosphorylase Kinase; domain 1 1317 1421 - -
Vvi8g0050 1673 SUPERFAMILY L domain-like 24 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0050 Vvi-Chr8 801754 859973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0050 23 720 Receptor kinase-like Gene Family AT5G01950 56.714 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vvi8g0050 PK_Tyr_Ser-Thr 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0050 - - vvi:100243382 1717.98