Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0040 ATGGAAGCTCCCGGTGGAAATTACAGGGGGTCTTCGGAGATAGGGAATGGTAATTCGAGAAGATACGGTATGCAGCTATCGGCTTCGAATATCATACAGGCGCCATTGTCGGCGTTGTTGGAGTATTCAGGTCTGCTGCGTGGCCGCTCAAGCCATCAAGAAACGGAGAGTTTGATCTATGGAAGTGGTTTTCGGGATCGGGTAGAGGAGTCAGCGCCAGTGAGCAATGGTGGGGAGGTATCAATTAGGATAATTGGTGCAGGCGAGCAAGAAAATGAGAGGGTGGGGGCTGGATTGGCATCGTTGGCGGTTGGTCCAGTGCGGGATAATGAGGCTTCTGTACAGCAGATTGCGGGGCAGGGGTCGGGGACGGTGACATTGGAGGGTCATGGTCAGGGTCAGGGGGAGTCTAGGGCGGGAGAGGGCATCTCTCAATCGGGAAATGGGAATGGGGATGGGGAAGCTGCTGATGGGGCTGGGGCCAATGGGAGGGATTCGTCTTATCAGAGATACGATATTCAGCAGGCTGCCAGGTGGATTGAGCAGGTGCTTCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAATTCTTCGGAAGCAAACAGCATTGAAGGGAGAGAGGAAAATATCTGTTCTGGTTGGGATCTCTCTTGTGTTCACACTTCACGTTGCTGGTGTTTACTGGTGGTATCATAATGATACTTTGGTGAGGCAGGCAGCAATGGTTTTCAAGTGTATTCTATTGATGTACTACAAGAACAGCAGAGGCAGAAATTATCGTAAACAGGGTCAACTGCTAACTTTGGTTGAATATACATTACTGTTGTATCGTGCCTTGTTGCCAGCACCTGTCTGGTATCGTTTTTTCTTGAACAAAGAATATGGGAGCCTATTTTCATCACTAATGACAGGGTTGTATTTAACTTTCAAGCTCACCTCTGTTGTTGAGAAGGTCCAGTCTTTCTTTGCTGCATTGAAGGCATTGTCACGGAAAGAGGTTCATTATGGAGCTTATGCTACGTCAGAGCAGGTCAATGCAGCTGGGGATCTGTGCGCTATTTGCCAGGAGAAGATGCATGCTCCAATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGGTTTGAGAGGGAAAGGACGTGCCCGTTGTGCAGGGCTTTGGTCAAGCCTGCAGATCTAAGATCATATGGCGATGGATCAACTAGTCTCTTTTTCCAGCTATTCTAA 1305 0.4782 MEAPGGNYRGSSEIGNGNSRRYGMQLSASNIIQAPLSALLEYSGLLRGRSSHQETESLIYGSGFRDRVEESAPVSNGGEVSIRIIGAGEQENERVGAGLASLAVGPVRDNEASVQQIAGQGSGTVTLEGHGQGQGESRAGEGISQSGNGNGDGEAADGAGANGRDSSYQRYDIQQAARWIEQVLPFTLLLLVVFIRQHLQGFFVTIWISAVMFKSNEILRKQTALKGERKISVLVGISLVFTLHVAGVYWWYHNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQLLTLVEYTLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSYGDGSTSLFFQLF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0040 434 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 254 434 IPR044235 GO:0061630|GO:1904294
Vvi8g0040 434 SUPERFAMILY RING/U-box 366 416 - -
Vvi8g0040 434 MobiDBLite consensus disorder prediction 123 163 - -
Vvi8g0040 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 421 IPR013083 -
Vvi8g0040 434 CDD RING-HC_RNFT1-like 371 411 - -
Vvi8g0040 434 ProSitePatterns Zinc finger RING-type signature. 388 397 IPR017907 -
Vvi8g0040 434 ProSiteProfiles Zinc finger RING-type profile. 373 411 IPR001841 -
Vvi8g0040 434 SMART ring_2 373 410 IPR001841 -
Vvi8g0040 434 Pfam Zinc finger, C3HC4 type (RING finger) 371 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0040 Vvi-Chr8 670105 683491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0040 1 434 C3H Transcription Factor Family AT5G01960 64.579 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0040 - K22379 vvi:100250131 820.846