Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g0030 | ATGGATGACTCACGAAGTGTTCCACAGGAGTTATCTCAGTCTACTGTGCCTAACTCCTCTAACAGTGATTCTTTGCTTAACCATTCTGACCTCCCAGCTGCTTGTGCTCTATGCCAAAAAATCCTTTTACCTGATGATGAAGGAACCGGGGAACTAGAACCTATCAGCATGTGTGGTGACTGTAAATTTTTGTTTCTTGAAGATCTGAGGTCCCCTGCTCAAGACTCTCATTGGAGGAGGCCACCCAGAGTAAGAAGAACAAGGTACAGCAGTTCTGAGTCAATAGAAAATCTTTTCTCACAACATTTCTCACATATGATTAACCTTGTTCGGCAAAATCAATCCACTGTCTCTGGGCATGAGGATCAACTTGTTGATGTAGATCCTGGTGCAAGATTACTGCAGCGCCCAAGTTCCCGTACTACCCCTAGTGGGTCTAGAAGGTGGCGACGGGTACCATCTGATACTGAAAGTGATGGCTTTGATAATTTGGATTCTCTTTATGGAGAGAGTGAATCAAATATCAGCTATGGTGGTTACAGGCTATTTAATGGTGAGAGTGATGCCATTTCCTTTAGTGCTTATGGAGGAGATTCTGATGCTTCAGTGGATGGCCACAGTTTCCTGGATACAGAAATGTATGTCCAACCAGATGATGGAAGCAATCTGAATAGTGATACAGATATTGATCCAATGCATGCAAGACTTAGTCAATGGAACTCAGATGATCAAGATGAAGATGACGATGAAGAAGAGGAGGAGGATGATGAATGGGAAGAAGCTGATCCTGAGGAAAATGTAGTTGAATCTGCAGAAGCAGAGGTGCATCCTCGGAATTTTTTCCCATCGAGCTCAAATGGAAACAATGTCCTTGTGAATATGAGAAGACGAATTCATTCTCCTGAATTTCTTGGTGCAATCCCTTGGAGACTCAGGGAAGGTAGACAAACATTTATTTCTAACTTCTTTTCTAACTTGGATGAATCAGAGGTATTGCCTTATTTTGGCAACTCTGAGGACTACCTTGATGCCAGAGGCTTTGAAGAATTTCTGGAGCATCTGGCTGAGACCGACAGCTCAAGACGAGGAGCACCTCCTGCAGCTGTGTCTTTTGTGAATAGTCTGCCTCGTGTAGTCATTAATGAGGAACATGAGAAGCGTGATGGTTTGGTCTGTGCAATCTGCAAGGATGTTCTATCTGTTGGCACTGAAGTGAACCAGCTTCCCTGCTTTCATCTCTATCACCCTTACTGCATTCTGCCATGGTTGACTGCACGAAACTCATGCCCCCTTTGTCGGTATGAGCTTCCAACTGATGACAAAGATTACGAGGAGGGAAAGCTGAATGCTAGCATCCACGAGATCCCACAGCAAGATTTAAGTGATGACAGTTCCTCTGATACCACTGATGGAGCTGAAGCAGATGACACCTGTGAAATTAGTCCTGAATGCAGAGAACTGGCAGATGAGGTTCCAGTCAGAAATGGCTCTGACCGAGAGGGTGGACGTGGGAGATGGTTTTTTCTTGCTGCTGCTCCTATTGCCGGTCTTGTTGGCATGGCTCTTGTGTTGTGGTTACGCATTCCGGTAACGGACAGAAGAGGGGCAATAGGCCGTTCTAACATCCAAGGCCAGACCCAACTCCACAGCTCTGGCTCTAGCCTACCTAACCAAAGGGAGAACAGGAGCAGGAGGTGGTGGTCCCTTTTCTAA | 1713 | 0.4553 | MDDSRSVPQELSQSTVPNSSNSDSLLNHSDLPAACALCQKILLPDDEGTGELEPISMCGDCKFLFLEDLRSPAQDSHWRRPPRVRRTRYSSSESIENLFSQHFSHMINLVRQNQSTVSGHEDQLVDVDPGARLLQRPSSRTTPSGSRRWRRVPSDTESDGFDNLDSLYGESESNISYGGYRLFNGESDAISFSAYGGDSDASVDGHSFLDTEMYVQPDDGSNLNSDTDIDPMHARLSQWNSDDQDEDDDEEEEEDDEWEEADPEENVVESAEAEVHPRNFFPSSSNGNNVLVNMRRRIHSPEFLGAIPWRLREGRQTFISNFFSNLDESEVLPYFGNSEDYLDARGFEEFLEHLAETDSSRRGAPPAAVSFVNSLPRVVINEEHEKRDGLVCAICKDVLSVGTEVNQLPCFHLYHPYCILPWLTARNSCPLCRYELPTDDKDYEEGKLNASIHEIPQQDLSDDSSSDTTDGAEADDTCEISPECRELADEVPVRNGSDREGGRGRWFFLAAAPIAGLVGMALVLWLRIPVTDRRGAIGRSNIQGQTQLHSSGSSLPNQRENRSRRWWSLF* | 571 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g0030 | 570 | MobiDBLite | consensus disorder prediction | 242 | 268 | - | - | |
Vvi8g0030 | 570 | MobiDBLite | consensus disorder prediction | 237 | 282 | - | - | |
Vvi8g0030 | 570 | MobiDBLite | consensus disorder prediction | 129 | 169 | - | - | |
Vvi8g0030 | 570 | ProSiteProfiles | Zinc finger RING-type profile. | 392 | 433 | IPR001841 | - | |
Vvi8g0030 | 570 | SMART | ring_2 | 392 | 432 | IPR001841 | - | |
Vvi8g0030 | 570 | MobiDBLite | consensus disorder prediction | 539 | 570 | - | - | |
Vvi8g0030 | 570 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 352 | 440 | IPR013083 | - | |
Vvi8g0030 | 570 | SUPERFAMILY | RING/U-box | 372 | 440 | - | - | |
Vvi8g0030 | 570 | MobiDBLite | consensus disorder prediction | 135 | 149 | - | - | |
Vvi8g0030 | 570 | Pfam | Ring finger domain | 392 | 433 | IPR001841 | - | |
Vvi8g0030 | 570 | MobiDBLite | consensus disorder prediction | 452 | 477 | - | - | |
Vvi8g0030 | 570 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vvi8g0030 | 570 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 228 | 437 | - | - | |
Vvi8g0030 | 570 | MobiDBLite | consensus disorder prediction | 7 | 25 | - | - | |
Vvi8g0030 | 570 | FunFam | E3 ubiquitin-protein ligase RING1-like | 353 | 439 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi8g0030 | Vvi-Chr8 | 454075 | 455787 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi8g0030 | 8 | 570 | C3H Transcription Factor Family | AT5G01980 | 43.448 | 2.40e-129 | 386 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g0030 | - | - | vvi:100255416 | 1079.7 |