Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0030 ATGGATGACTCACGAAGTGTTCCACAGGAGTTATCTCAGTCTACTGTGCCTAACTCCTCTAACAGTGATTCTTTGCTTAACCATTCTGACCTCCCAGCTGCTTGTGCTCTATGCCAAAAAATCCTTTTACCTGATGATGAAGGAACCGGGGAACTAGAACCTATCAGCATGTGTGGTGACTGTAAATTTTTGTTTCTTGAAGATCTGAGGTCCCCTGCTCAAGACTCTCATTGGAGGAGGCCACCCAGAGTAAGAAGAACAAGGTACAGCAGTTCTGAGTCAATAGAAAATCTTTTCTCACAACATTTCTCACATATGATTAACCTTGTTCGGCAAAATCAATCCACTGTCTCTGGGCATGAGGATCAACTTGTTGATGTAGATCCTGGTGCAAGATTACTGCAGCGCCCAAGTTCCCGTACTACCCCTAGTGGGTCTAGAAGGTGGCGACGGGTACCATCTGATACTGAAAGTGATGGCTTTGATAATTTGGATTCTCTTTATGGAGAGAGTGAATCAAATATCAGCTATGGTGGTTACAGGCTATTTAATGGTGAGAGTGATGCCATTTCCTTTAGTGCTTATGGAGGAGATTCTGATGCTTCAGTGGATGGCCACAGTTTCCTGGATACAGAAATGTATGTCCAACCAGATGATGGAAGCAATCTGAATAGTGATACAGATATTGATCCAATGCATGCAAGACTTAGTCAATGGAACTCAGATGATCAAGATGAAGATGACGATGAAGAAGAGGAGGAGGATGATGAATGGGAAGAAGCTGATCCTGAGGAAAATGTAGTTGAATCTGCAGAAGCAGAGGTGCATCCTCGGAATTTTTTCCCATCGAGCTCAAATGGAAACAATGTCCTTGTGAATATGAGAAGACGAATTCATTCTCCTGAATTTCTTGGTGCAATCCCTTGGAGACTCAGGGAAGGTAGACAAACATTTATTTCTAACTTCTTTTCTAACTTGGATGAATCAGAGGTATTGCCTTATTTTGGCAACTCTGAGGACTACCTTGATGCCAGAGGCTTTGAAGAATTTCTGGAGCATCTGGCTGAGACCGACAGCTCAAGACGAGGAGCACCTCCTGCAGCTGTGTCTTTTGTGAATAGTCTGCCTCGTGTAGTCATTAATGAGGAACATGAGAAGCGTGATGGTTTGGTCTGTGCAATCTGCAAGGATGTTCTATCTGTTGGCACTGAAGTGAACCAGCTTCCCTGCTTTCATCTCTATCACCCTTACTGCATTCTGCCATGGTTGACTGCACGAAACTCATGCCCCCTTTGTCGGTATGAGCTTCCAACTGATGACAAAGATTACGAGGAGGGAAAGCTGAATGCTAGCATCCACGAGATCCCACAGCAAGATTTAAGTGATGACAGTTCCTCTGATACCACTGATGGAGCTGAAGCAGATGACACCTGTGAAATTAGTCCTGAATGCAGAGAACTGGCAGATGAGGTTCCAGTCAGAAATGGCTCTGACCGAGAGGGTGGACGTGGGAGATGGTTTTTTCTTGCTGCTGCTCCTATTGCCGGTCTTGTTGGCATGGCTCTTGTGTTGTGGTTACGCATTCCGGTAACGGACAGAAGAGGGGCAATAGGCCGTTCTAACATCCAAGGCCAGACCCAACTCCACAGCTCTGGCTCTAGCCTACCTAACCAAAGGGAGAACAGGAGCAGGAGGTGGTGGTCCCTTTTCTAA 1713 0.4553 MDDSRSVPQELSQSTVPNSSNSDSLLNHSDLPAACALCQKILLPDDEGTGELEPISMCGDCKFLFLEDLRSPAQDSHWRRPPRVRRTRYSSSESIENLFSQHFSHMINLVRQNQSTVSGHEDQLVDVDPGARLLQRPSSRTTPSGSRRWRRVPSDTESDGFDNLDSLYGESESNISYGGYRLFNGESDAISFSAYGGDSDASVDGHSFLDTEMYVQPDDGSNLNSDTDIDPMHARLSQWNSDDQDEDDDEEEEEDDEWEEADPEENVVESAEAEVHPRNFFPSSSNGNNVLVNMRRRIHSPEFLGAIPWRLREGRQTFISNFFSNLDESEVLPYFGNSEDYLDARGFEEFLEHLAETDSSRRGAPPAAVSFVNSLPRVVINEEHEKRDGLVCAICKDVLSVGTEVNQLPCFHLYHPYCILPWLTARNSCPLCRYELPTDDKDYEEGKLNASIHEIPQQDLSDDSSSDTTDGAEADDTCEISPECRELADEVPVRNGSDREGGRGRWFFLAAAPIAGLVGMALVLWLRIPVTDRRGAIGRSNIQGQTQLHSSGSSLPNQRENRSRRWWSLF* 571
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0030 570 MobiDBLite consensus disorder prediction 242 268 - -
Vvi8g0030 570 MobiDBLite consensus disorder prediction 237 282 - -
Vvi8g0030 570 MobiDBLite consensus disorder prediction 129 169 - -
Vvi8g0030 570 ProSiteProfiles Zinc finger RING-type profile. 392 433 IPR001841 -
Vvi8g0030 570 SMART ring_2 392 432 IPR001841 -
Vvi8g0030 570 MobiDBLite consensus disorder prediction 539 570 - -
Vvi8g0030 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 440 IPR013083 -
Vvi8g0030 570 SUPERFAMILY RING/U-box 372 440 - -
Vvi8g0030 570 MobiDBLite consensus disorder prediction 135 149 - -
Vvi8g0030 570 Pfam Ring finger domain 392 433 IPR001841 -
Vvi8g0030 570 MobiDBLite consensus disorder prediction 452 477 - -
Vvi8g0030 570 MobiDBLite consensus disorder prediction 1 25 - -
Vvi8g0030 570 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 228 437 - -
Vvi8g0030 570 MobiDBLite consensus disorder prediction 7 25 - -
Vvi8g0030 570 FunFam E3 ubiquitin-protein ligase RING1-like 353 439 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi8g0030 Vvi-Chr8 454075 455787 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0030 8 570 C3H Transcription Factor Family AT5G01980 43.448 2.40e-129 386
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0030 - - vvi:100255416 1079.7