Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0020 ATGGAAGGGTTGGATGGTTTGATAGAGAGGCTATTGGAAGCAAGAAAATGTAGAGGAAAAAGAATACAGATGAGCGAGTCTGAGATCCGCCAACTTTGTATTACTGCCAAGGATGTCTTCCTCAGCCAGCCCAATCTCTTGGAATTAGAAGCTCCCATTAATGTTTGTGGAGACATACATGGACAGTACTCAGACCTCCTCCGGTTATTCGAATATGGGGGTTTTCCCCCTGACTCCAACTACCTACTCCTGGGAGACTACGTGGATAGAGGAAAACAAAGTATAGAGACAATATCCCTTCTCCTCTGCTACAAGATCAAGTACCCTGATAACTTCTTTCTCCTCCGAGGAAACCATGAATGTGCTTCCATCAATAGAATCTACGGCTTCTACGACGAGTGCAAGCGCCGCTTCAGTGTCCGCCTGTGGAAGATTTTCACCGACTGCTTCAACTGTTTACCGGTCGCCGCTATCATCGAGAACAAAATATTGTGCATGCATGGTGGGCTGTCGCCGGAGATAGAGAGCTTGGATCAGATAAGGGCCATAGAGAGGCCGGTGGATGTGCCGGACCAAGGCCTCTTGTGTGATCTGCTGTGGGCTGATCCTGACAGAGATATCAAGGGATGGGGGGAGAATGATAGGGGTGTTTCCTATACTTTTGGAGCTGATAAGGTGGCCGAATTCTTGAAGAAGCATGATCTTGATCTCATATGTCGAGCCCATCAGGTTGTGGAAGATGGATACGAATTCTTTGCAGAGAGGCAGCTGGTAACAATATTCTCAGCTCCAAACTACTGTGGAGAATTCAACAATGCAGGGGCACTGATGAGTGTAGATGCAAGTTTGCTGTGCTCATTTCAGATTCTCAAACCCTTCAAAGCAAAGGAGTGA 894 0.4709 MEGLDGLIERLLEARKCRGKRIQMSESEIRQLCITAKDVFLSQPNLLELEAPINVCGDIHGQYSDLLRLFEYGGFPPDSNYLLLGDYVDRGKQSIETISLLLCYKIKYPDNFFLLRGNHECASINRIYGFYDECKRRFSVRLWKIFTDCFNCLPVAAIIENKILCMHGGLSPEIESLDQIRAIERPVDVPDQGLLCDLLWADPDRDIKGWGENDRGVSYTFGADKVAEFLKKHDLDLICRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFNNAGALMSVDASLLCSFQILKPFKAKE* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0020 297 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Vvi8g0020 297 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Vvi8g0020 297 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Vvi8g0020 297 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Vvi8g0020 297 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Vvi8g0020 297 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Vvi8g0020 297 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Vvi8g0020 297 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 295 - -
Vvi8g0020 297 Pfam Calcineurin-like phosphoesterase 52 244 IPR004843 GO:0016787
Vvi8g0020 297 SMART pp2a_7 24 294 IPR006186 GO:0016787
Vvi8g0020 297 Gene3D - 2 297 IPR029052 -
Vvi8g0020 297 CDD MPP_PP1_PPKL 4 292 - -
Vvi8g0020 297 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Vvi8g0020 297 SUPERFAMILY Metallo-dependent phosphatases 20 294 IPR029052 -
Vvi8g0020 297 FunFam Serine/threonine-protein phosphatase 1 297 - -
Vvi8g0020 297 Pfam Serine-threonine protein phosphatase N-terminal domain 4 50 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0020 Vvi-Chr8 342177 344425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0020 31 240 Calmodulin-binding Proteins AT5G63870 30.800 3.04e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0020 K06269 - vvi:100263930 614.764