Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0019 ATGGACAAATACGAAAAGCTTGAGAAGGTCGGTGAAGGCACCTACGGCAAGGTTTACAAGGCCAAGGACAAAACCAGCGGCCAGGTGGTGGCTCTCAAGAAGACCCGCCTTGAAATGGACGAGGAAGGCGTCCCTCCCACCGCCCTCCGTGAGGTCTCCCTCCTCCAGATGCTCTCCCAGTCCCTCTACGTCGTCCGCCTCCTCTGCGTCGAGCACCTTGACAAGAACGGCAAGCCTTTTCTCTACTTGGTTTTCGAGTACCTTGATACTGATCTCAAGAAGTTCATCGATTCCCACCGCAAGCCTCCAAACCCTAGGCCGATGCCCCCCGCCCTCATCCAGAGTTTTCTCTACCAGCTCTGCAAGGGTGTTGCGCACTGCCACAGCCACGGCGTCCTTCACCGGGATTTGAAGCCTCAGAACTTGTTGGTGGATAAGGACAAGGGGATTCTCAAGATCGCCGATCTCGGCCTCGGGAGGGCCTTTACTGTTCCTCTCAAGAGCTACACTCATGAGATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGCTGAAATGGTAAGAAGGCAAGCTTTATTTCCGGGTGACTCCGAGTTTCAACAACTGCTTCATATATTCAGGTTGTTGGGAACGCCAACTGAGAAACAGTGGCCTGGAGTTAGTTCTCTGAGAGACTGGCATGTCTATCCACAGTGGGAACCTCAAAACTTGGCACGTGCTGTTCCATCATTGGGACCTGATGGTGTTGACCTTCTATCGAAGATGCTTAAATATGACCCATCTGAAAGAATCTCAGCTAAAGCAGCTTTGGATCATCCCTACTTCGACAGCCTTGACAAATCTCAATTCTGA 912 0.5154 MDKYEKLEKVGEGTYGKVYKAKDKTSGQVVALKKTRLEMDEEGVPPTALREVSLLQMLSQSLYVVRLLCVEHLDKNGKPFLYLVFEYLDTDLKKFIDSHRKPPNPRPMPPALIQSFLYQLCKGVAHCHSHGVLHRDLKPQNLLVDKDKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLARAVPSLGPDGVDLLSKMLKYDPSERISAKAALDHPYFDSLDKSQF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0019 303 PANTHER CELL DIVISION PROTEIN KINASE 1 295 - -
Vvi8g0019 303 FunFam Cyclin-dependent kinase B2,2 1 89 - -
Vvi8g0019 303 ProSiteProfiles Protein kinase domain profile. 4 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0019 303 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi8g0019 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vvi8g0019 303 SMART serkin_6 4 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0019 303 Pfam Protein kinase domain 4 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0019 303 FunFam Cyclin-dependent kinase 2 91 302 - -
Vvi8g0019 303 SUPERFAMILY Protein kinase-like (PK-like) 1 298 IPR011009 -
Vvi8g0019 303 Gene3D Transferase(Phosphotransferase) domain 1 91 302 - -
Vvi8g0019 303 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0019 Vvi-Chr8 334948 338658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0019 1 303 Core Cell Cycle Gene Families AT3G54180 83.819 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vvi8g0019 Pkinase 6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0019 K07760 - vvi:100262151 610.912