Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0013 ATGGGCAACTGCGGCAGCACTGAGGATAACCCTGTCGTTTCTCACGCTCAAGTTCAGCAGCTCCACATCCTCTCTTCCTTGTCTGTCAAAGATGCTGCTCCCAATTGTGGAAAGAAGCACAGCCGCTCTGTCTCAGATCTGAGCGATCATCACTCCACTCCCCGCAACCTTGACGACTCCGGCAAGAACTCACTCCTCTACACCCATGTCATTGCTTTCACATTGTTCGAGCTCGAGACTATTACCAAGAGTTTTCGCTCTGATTACATTCTCGGTGAGGGAGGATTTGGCACTGTGTACAAGGGTTACATTGATGAGAATGTTAGGGTTGGGCTCAAGTCCCTCCCCGTTGCTGTCAAGGTTTTGAACAAGGAGGGATTTCAGGGTCATAGAGAATGGCTTACGGAGGTGAACTTTTTAGGGCAGCTGAGGCATCCCAATCTGGTGAAGTTGATAGGGTATTGTTGCGAGGACGATCACCGGTTGCTTGTGTACGAGTTTATGTTCCGAGGAAGCCTCGAAAATCACTTGTTTCGAAAAGCGACTGTCCCATTATCTTGGGCAACTAGGATGATGATTGCTCTGGGTGCTGCGAAAGGGCTTGCTTTCCTCCATAATGCTGAAAGGCCTGTAATCTATCGGGACTTCAAAACGTCTAATATATTATTAGACTCTGATTATACAGCCAAGCTTTCTGACTTTGGGCTTGCAAAAGCTGGACCACAAGGTGATGAGACCCATGTATCAACTCGTGTAATGGGTACCTATGGTTATGCTGCACCCGAATATGTAATGACTGGCCACCTGACTGCCAGGAGCGATGTGTACAGCTTTGGAGTTGTTCTTCTAGAGTTGTTGACGGGAAGGAAGTCAGTTGACAAGACCCGACCTAGCAAGGAGCAGAGCTTGGTTGATTGGGCCCGGCCTAAACTGAATGACAAGCGAAAGTTGCTTCAAATAATAGACCCTAGATTGGAGAATCAGTATTCTGTAAGGGCAGCACAGAAAGCATGCAGTTTGGCATACTATTGCCTGAGCCAGAACCCTAAAGCAAGGCCCTTAATGAGTGATGTAGTGGAAACTTTGGAGCCATTACAAGATAGTAGTGGTGGCACAAGTGAAGTTTCGTCTTCTACTAAGAACCTATCAGTTGGTAGTGGTGGTCCTTTTGCCAAGGCAGGAATGTCTGATTACCGAATGCAACACAGATTTGCCAACAAAGTTGGGGCTGGTGCTGTTTGTCGGTCTCCAAACCCCAATTGTTCCCCAGGTGGCCCTGCTGCATGCAGGGTTAGATGA 1299 0.4796 MGNCGSTEDNPVVSHAQVQQLHILSSLSVKDAAPNCGKKHSRSVSDLSDHHSTPRNLDDSGKNSLLYTHVIAFTLFELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGFQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPSKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQDSSGGTSEVSSSTKNLSVGSGGPFAKAGMSDYRMQHRFANKVGAGAVCRSPNPNCSPGGPAACRVR* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0013 432 CDD STKc_IRAK 91 365 - -
Vvi8g0013 432 MobiDBLite consensus disorder prediction 364 385 - -
Vvi8g0013 432 SUPERFAMILY Protein kinase-like (PK-like) 62 363 IPR011009 -
Vvi8g0013 432 MobiDBLite consensus disorder prediction 42 57 - -
Vvi8g0013 432 MobiDBLite consensus disorder prediction 34 58 - -
Vvi8g0013 432 Gene3D Transferase(Phosphotransferase) domain 1 168 384 - -
Vvi8g0013 432 FunFam Serine/threonine-protein kinase BIK1 52 167 - -
Vvi8g0013 432 Pfam Protein tyrosine and serine/threonine kinase 90 362 IPR001245 GO:0004672|GO:0006468
Vvi8g0013 432 ProSitePatterns Protein kinases ATP-binding region signature. 91 120 IPR017441 GO:0005524
Vvi8g0013 432 MobiDBLite consensus disorder prediction 364 386 - -
Vvi8g0013 432 Gene3D Phosphorylase Kinase; domain 1 47 167 - -
Vvi8g0013 432 FunFam Probable serine/threonine-protein kinase PBL8 168 381 - -
Vvi8g0013 432 ProSiteProfiles Protein kinase domain profile. 85 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0013 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vvi8g0013 432 PANTHER OS01G0588500 PROTEIN-RELATED 53 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0013 Vvi-Chr8 294999 298994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0013 50 375 Glycoside Hydrolase AT3G07070 50.746 1.38e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi8g0013 PK_Tyr_Ser-Thr 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0013 - - vvi:100260389 871.307