Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0008 ATGGCAGCTGTGAAGTTGTTCTTCCTGCTGGTGTTCTCCGGAGGGATGCATGGGATCTTGTGTTTTACCAACTCTGATGATGCTGGGGTACTCCAGTCTTTGAAGGGTCAGTGGGAAAATACACCACCAAGCTGGGAAAAGTCAGATCCTTGTGGCGTACCCTGGGAAGGAATCACATGCAACAACTCAAGGGTGATTGCATTGGGATTATCGACCATGGGCCTCAAAGGAAAGCTAGAGGGTGATATTGGGGGGCTAACCGAGTTGAGATCCTTGGACTTGTCATTCAATCTAGGTCTCACAGGTTCTCTCACTCCAAAGTTAGGGAATTTAGAAAATCTGAACATCCTAATCCTTGCAGGCTGTGGCTTCACCGGTCAAATTCCAGATGAATTGGGAAATCTTGCGCAGCTGACCTTCTTGGCACTGAATTCAAACAACTTAACTGGTCAAATACCTCCTTCTTTGGGTAGACTCTCCAATCTCTACTGGCTGGATCTGGCAGAGAATAAGTTGTCAGGACCTTTCCCAACTTCAACATTAACCAGCCCGGGCTTGGACCAACTTCTAAAGGCAAAACACTTCCATTTCAATAAGAATCAGCTTTCAGGCCCCATTCCGCGGAAACTTTTCAGCTCTGACATGGAACTAATACATGTACTATTTGATGGAAATCAATTGTCTGGGAGTATACCAGACACACTAGGACTTGTTCAGACTCTTGAGGTTCTGCGGCTTGACAGAAATTCTCTTAGTGGGACCGTCCCATCAAACCTCAACAACCTAACGATCGTCAATGAATTGAATTTAGCGCACAACCAACTTATTGGGCCAATACCAAACTTAACAGGAATGGACCACCTTAATTATGTCGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTGATTCTAGAACATGGATCACTCTATGGGAGTGTGCCACAAAAAGTCTTCAGCTTTCCAGGGATAGAGCAAGTGAAACTAAAGAACAATGCATTCAATGACACATTCAGCATGGGTGACAGCATAGGCGATCAACTGCAGCTTGTTGATTTGCAAAACAACCAAATTCCATCAGTAACACTGAGTTCTGGATACACAGATGCATTAATACTCGTGGGAAACCCTGTGTGCAAGGTTACTCTCTTGAATACTGCCTACTGTCAAATTCAGGATCAAACCCCAAAGACATATTCTACCAACCTGGCTAATTGTGGAAGCGAACTTTGTTCCCCAGACCAGAAGCTCAATCCTCAGAGTTGTGAGTGCGCTTATGCATATGAAGGGACACTATACTTCAGAGGTCCAACCTTCAGGGATTTGTCTGACTTAAACAAATTCCATTCACTAGAATCAAGCCTTTGGACGAAACTGAACCTTACTCCTGGTTCAGTTTTTCTTCAGAACCCCTTCTTCAATATTGATGACTATCTTCAGATACAATTGGCACTCTTTCCACCCACAGGAAAATATTTTAATAGGTCAGAGGTTCAGAGGATTGGATTTTCCCTGAGTAATCAAACCTACAAGCCTCCTGAAGAATTTGGGCCCTACTATTTTATCGCATCTCCATACCACTTCCAAGGACATGGAGGAACTTCTTTTAGCTTGGGTGTGATTATTGGGATAGCAATTGGCTGTACCATTCTGGTTGTGGGGCTTGTGGCATTGGGGATATATGCTGTTCGACAAAAGAAACGTGCAGAAAGGGCTATTGAATTAAGCAAACCATTTGCTTCTTGGGCTCCAAGCGGCAAAGATAGTGGTGCTGCACCACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAAGTGCACCAATAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAGGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCTCAGCAAGGATCTATGCAAGGTGGGCTCGAATTCAAAACTGAAATTGAGCTGCTTTCACGGGTTCATCATAAGAATCTTGTCGGCCTTGTGGGCTTTTGCTTTGAACAAGGAGAACAGATGCTGGTTTATGAATTTATGCCCAATGGAACACTCAGGGAGAGCTTGTCAGGGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAGGCTCAGCCAGAGGCTTAGCTTACCTTCATGAGCTTGCAAATCCTCCTATAATTCACAGAGATATCAAGTCCACCAATATTCTGTTGGATGAAAATTTAACCGCAAAGGTTGCAGATTTTGGTTTGTCTAAACTAGTATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTGGGTTATCTTGATCCTGAATATTACATGACTCAACAACTAACTGAGAAGAGCGATGTATACAGCTATGGAGTAGTTATGCTTGAACTGGTATCTGCTAGGCAACCAATTGAGAAGGGAAAGTACATTGTTCGTGAGGTGAGAATGGCAATGGATAAGAATGATGAAGAGCACTATGGCTTGAGGGAGATAATGGATCCAGCAATCAGAAACGTGACAAATCTTATAGGGTTTAGGAAGTTTCTGGAGTTGGCCATGCAATGTGTTGAAGAGTCAGCTGGAGACCGTCCAACAATGAGTGATGTGGTCAAGACAATTGAAACCGTTCTACAGAATGATGGAATGAACACAAACTCAACGACATCTGCTTCCTCATCTGCTACCGAGTTCGGAGCTTCAAAAGGGGTTCCTAGGCATCCTTACAATGATTCCCTGCCAAGAAAGGAAGTTAATGATAGTGATGCCTTCGACTACAGTGGTGGATACACACTCTCAACAAAGGTTGAGCCAAAGTAG 2886 0.4369 MAAVKLFFLLVFSGGMHGILCFTNSDDAGVLQSLKGQWENTPPSWEKSDPCGVPWEGITCNNSRVIALGLSTMGLKGKLEGDIGGLTELRSLDLSFNLGLTGSLTPKLGNLENLNILILAGCGFTGQIPDELGNLAQLTFLALNSNNLTGQIPPSLGRLSNLYWLDLAENKLSGPFPTSTLTSPGLDQLLKAKHFHFNKNQLSGPIPRKLFSSDMELIHVLFDGNQLSGSIPDTLGLVQTLEVLRLDRNSLSGTVPSNLNNLTIVNELNLAHNQLIGPIPNLTGMDHLNYVDLSNNTFDPSEAPAWFSTLPSLTTLILEHGSLYGSVPQKVFSFPGIEQVKLKNNAFNDTFSMGDSIGDQLQLVDLQNNQIPSVTLSSGYTDALILVGNPVCKVTLLNTAYCQIQDQTPKTYSTNLANCGSELCSPDQKLNPQSCECAYAYEGTLYFRGPTFRDLSDLNKFHSLESSLWTKLNLTPGSVFLQNPFFNIDDYLQIQLALFPPTGKYFNRSEVQRIGFSLSNQTYKPPEEFGPYYFIASPYHFQGHGGTSFSLGVIIGIAIGCTILVVGLVALGIYAVRQKKRAERAIELSKPFASWAPSGKDSGAAPQLKGARWFSYDELKKCTNNFSESNEIGSGGYGKVYRGMLSGGQIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSGRSGIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDIKSTNILLDENLTAKVADFGLSKLVSDSAKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSYGVVMLELVSARQPIEKGKYIVREVRMAMDKNDEEHYGLREIMDPAIRNVTNLIGFRKFLELAMQCVEESAGDRPTMSDVVKTIETVLQNDGMNTNSTTSASSSATEFGASKGVPRHPYNDSLPRKEVNDSDAFDYSGGYTLSTKVEPK* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0008 961 ProSitePatterns Protein kinases ATP-binding region signature. 632 654 IPR017441 GO:0005524
Vvi8g0008 961 MobiDBLite consensus disorder prediction 903 921 - -
Vvi8g0008 961 SMART serkin_6 626 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0008 961 SUPERFAMILY RNI-like 282 413 - -
Vvi8g0008 961 MobiDBLite consensus disorder prediction 903 961 - -
Vvi8g0008 961 ProSiteProfiles Protein kinase domain profile. 626 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0008 961 FunFam Leucine-rich repeat family protein 26 181 - -
Vvi8g0008 961 Gene3D Transferase(Phosphotransferase) domain 1 702 921 - -
Vvi8g0008 961 Gene3D Phosphorylase Kinase; domain 1 599 701 - -
Vvi8g0008 961 FunFam Leucine-rich repeat protein kinase family protein 594 701 - -
Vvi8g0008 961 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 702 913 - -
Vvi8g0008 961 PANTHER RECEPTOR-LIKE PROTEIN 55 35 900 - -
Vvi8g0008 961 SUPERFAMILY Protein kinase-like (PK-like) 611 909 IPR011009 -
Vvi8g0008 961 Gene3D Ribonuclease Inhibitor 184 419 IPR032675 -
Vvi8g0008 961 SUPERFAMILY L domain-like 33 296 - -
Vvi8g0008 961 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Vvi8g0008 961 CDD STKc_IRAK 632 897 - -
Vvi8g0008 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672|GO:0006468
Vvi8g0008 961 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Vvi8g0008 961 FunFam Predicted protein 184 405 - -
Vvi8g0008 961 Pfam Protein tyrosine and serine/threonine kinase 629 895 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0008 Vvi-Chr8 221918 228372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0008 19 961 Receptor kinase-like Gene Family AT1G79620 69.538 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vvi8g0008 PK_Tyr_Ser-Thr 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0008 - - vvi:100257037 1903.26