Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g0008 | ATGGCAGCTGTGAAGTTGTTCTTCCTGCTGGTGTTCTCCGGAGGGATGCATGGGATCTTGTGTTTTACCAACTCTGATGATGCTGGGGTACTCCAGTCTTTGAAGGGTCAGTGGGAAAATACACCACCAAGCTGGGAAAAGTCAGATCCTTGTGGCGTACCCTGGGAAGGAATCACATGCAACAACTCAAGGGTGATTGCATTGGGATTATCGACCATGGGCCTCAAAGGAAAGCTAGAGGGTGATATTGGGGGGCTAACCGAGTTGAGATCCTTGGACTTGTCATTCAATCTAGGTCTCACAGGTTCTCTCACTCCAAAGTTAGGGAATTTAGAAAATCTGAACATCCTAATCCTTGCAGGCTGTGGCTTCACCGGTCAAATTCCAGATGAATTGGGAAATCTTGCGCAGCTGACCTTCTTGGCACTGAATTCAAACAACTTAACTGGTCAAATACCTCCTTCTTTGGGTAGACTCTCCAATCTCTACTGGCTGGATCTGGCAGAGAATAAGTTGTCAGGACCTTTCCCAACTTCAACATTAACCAGCCCGGGCTTGGACCAACTTCTAAAGGCAAAACACTTCCATTTCAATAAGAATCAGCTTTCAGGCCCCATTCCGCGGAAACTTTTCAGCTCTGACATGGAACTAATACATGTACTATTTGATGGAAATCAATTGTCTGGGAGTATACCAGACACACTAGGACTTGTTCAGACTCTTGAGGTTCTGCGGCTTGACAGAAATTCTCTTAGTGGGACCGTCCCATCAAACCTCAACAACCTAACGATCGTCAATGAATTGAATTTAGCGCACAACCAACTTATTGGGCCAATACCAAACTTAACAGGAATGGACCACCTTAATTATGTCGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTGATTCTAGAACATGGATCACTCTATGGGAGTGTGCCACAAAAAGTCTTCAGCTTTCCAGGGATAGAGCAAGTGAAACTAAAGAACAATGCATTCAATGACACATTCAGCATGGGTGACAGCATAGGCGATCAACTGCAGCTTGTTGATTTGCAAAACAACCAAATTCCATCAGTAACACTGAGTTCTGGATACACAGATGCATTAATACTCGTGGGAAACCCTGTGTGCAAGGTTACTCTCTTGAATACTGCCTACTGTCAAATTCAGGATCAAACCCCAAAGACATATTCTACCAACCTGGCTAATTGTGGAAGCGAACTTTGTTCCCCAGACCAGAAGCTCAATCCTCAGAGTTGTGAGTGCGCTTATGCATATGAAGGGACACTATACTTCAGAGGTCCAACCTTCAGGGATTTGTCTGACTTAAACAAATTCCATTCACTAGAATCAAGCCTTTGGACGAAACTGAACCTTACTCCTGGTTCAGTTTTTCTTCAGAACCCCTTCTTCAATATTGATGACTATCTTCAGATACAATTGGCACTCTTTCCACCCACAGGAAAATATTTTAATAGGTCAGAGGTTCAGAGGATTGGATTTTCCCTGAGTAATCAAACCTACAAGCCTCCTGAAGAATTTGGGCCCTACTATTTTATCGCATCTCCATACCACTTCCAAGGACATGGAGGAACTTCTTTTAGCTTGGGTGTGATTATTGGGATAGCAATTGGCTGTACCATTCTGGTTGTGGGGCTTGTGGCATTGGGGATATATGCTGTTCGACAAAAGAAACGTGCAGAAAGGGCTATTGAATTAAGCAAACCATTTGCTTCTTGGGCTCCAAGCGGCAAAGATAGTGGTGCTGCACCACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAAGTGCACCAATAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAGGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCTCAGCAAGGATCTATGCAAGGTGGGCTCGAATTCAAAACTGAAATTGAGCTGCTTTCACGGGTTCATCATAAGAATCTTGTCGGCCTTGTGGGCTTTTGCTTTGAACAAGGAGAACAGATGCTGGTTTATGAATTTATGCCCAATGGAACACTCAGGGAGAGCTTGTCAGGGAGATCTGGCATTCATTTGGATTGGAAGAGGAGACTCCGTATTGCTTTAGGCTCAGCCAGAGGCTTAGCTTACCTTCATGAGCTTGCAAATCCTCCTATAATTCACAGAGATATCAAGTCCACCAATATTCTGTTGGATGAAAATTTAACCGCAAAGGTTGCAGATTTTGGTTTGTCTAAACTAGTATCAGACAGTGCAAAAGGGCATGTTTCAACTCAAGTCAAAGGCACATTGGGTTATCTTGATCCTGAATATTACATGACTCAACAACTAACTGAGAAGAGCGATGTATACAGCTATGGAGTAGTTATGCTTGAACTGGTATCTGCTAGGCAACCAATTGAGAAGGGAAAGTACATTGTTCGTGAGGTGAGAATGGCAATGGATAAGAATGATGAAGAGCACTATGGCTTGAGGGAGATAATGGATCCAGCAATCAGAAACGTGACAAATCTTATAGGGTTTAGGAAGTTTCTGGAGTTGGCCATGCAATGTGTTGAAGAGTCAGCTGGAGACCGTCCAACAATGAGTGATGTGGTCAAGACAATTGAAACCGTTCTACAGAATGATGGAATGAACACAAACTCAACGACATCTGCTTCCTCATCTGCTACCGAGTTCGGAGCTTCAAAAGGGGTTCCTAGGCATCCTTACAATGATTCCCTGCCAAGAAAGGAAGTTAATGATAGTGATGCCTTCGACTACAGTGGTGGATACACACTCTCAACAAAGGTTGAGCCAAAGTAG | 2886 | 0.4369 | MAAVKLFFLLVFSGGMHGILCFTNSDDAGVLQSLKGQWENTPPSWEKSDPCGVPWEGITCNNSRVIALGLSTMGLKGKLEGDIGGLTELRSLDLSFNLGLTGSLTPKLGNLENLNILILAGCGFTGQIPDELGNLAQLTFLALNSNNLTGQIPPSLGRLSNLYWLDLAENKLSGPFPTSTLTSPGLDQLLKAKHFHFNKNQLSGPIPRKLFSSDMELIHVLFDGNQLSGSIPDTLGLVQTLEVLRLDRNSLSGTVPSNLNNLTIVNELNLAHNQLIGPIPNLTGMDHLNYVDLSNNTFDPSEAPAWFSTLPSLTTLILEHGSLYGSVPQKVFSFPGIEQVKLKNNAFNDTFSMGDSIGDQLQLVDLQNNQIPSVTLSSGYTDALILVGNPVCKVTLLNTAYCQIQDQTPKTYSTNLANCGSELCSPDQKLNPQSCECAYAYEGTLYFRGPTFRDLSDLNKFHSLESSLWTKLNLTPGSVFLQNPFFNIDDYLQIQLALFPPTGKYFNRSEVQRIGFSLSNQTYKPPEEFGPYYFIASPYHFQGHGGTSFSLGVIIGIAIGCTILVVGLVALGIYAVRQKKRAERAIELSKPFASWAPSGKDSGAAPQLKGARWFSYDELKKCTNNFSESNEIGSGGYGKVYRGMLSGGQIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSGRSGIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDIKSTNILLDENLTAKVADFGLSKLVSDSAKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSYGVVMLELVSARQPIEKGKYIVREVRMAMDKNDEEHYGLREIMDPAIRNVTNLIGFRKFLELAMQCVEESAGDRPTMSDVVKTIETVLQNDGMNTNSTTSASSSATEFGASKGVPRHPYNDSLPRKEVNDSDAFDYSGGYTLSTKVEPK* | 962 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g0008 | 961 | ProSitePatterns | Protein kinases ATP-binding region signature. | 632 | 654 | IPR017441 | GO:0005524 | |
Vvi8g0008 | 961 | MobiDBLite | consensus disorder prediction | 903 | 921 | - | - | |
Vvi8g0008 | 961 | SMART | serkin_6 | 626 | 900 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi8g0008 | 961 | SUPERFAMILY | RNI-like | 282 | 413 | - | - | |
Vvi8g0008 | 961 | MobiDBLite | consensus disorder prediction | 903 | 961 | - | - | |
Vvi8g0008 | 961 | ProSiteProfiles | Protein kinase domain profile. | 626 | 900 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi8g0008 | 961 | FunFam | Leucine-rich repeat family protein | 26 | 181 | - | - | |
Vvi8g0008 | 961 | Gene3D | Transferase(Phosphotransferase) domain 1 | 702 | 921 | - | - | |
Vvi8g0008 | 961 | Gene3D | Phosphorylase Kinase; domain 1 | 599 | 701 | - | - | |
Vvi8g0008 | 961 | FunFam | Leucine-rich repeat protein kinase family protein | 594 | 701 | - | - | |
Vvi8g0008 | 961 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 702 | 913 | - | - | |
Vvi8g0008 | 961 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 35 | 900 | - | - | |
Vvi8g0008 | 961 | SUPERFAMILY | Protein kinase-like (PK-like) | 611 | 909 | IPR011009 | - | |
Vvi8g0008 | 961 | Gene3D | Ribonuclease Inhibitor | 184 | 419 | IPR032675 | - | |
Vvi8g0008 | 961 | SUPERFAMILY | L domain-like | 33 | 296 | - | - | |
Vvi8g0008 | 961 | Pfam | Leucine rich repeat N-terminal domain | 25 | 61 | IPR013210 | - | |
Vvi8g0008 | 961 | CDD | STKc_IRAK | 632 | 897 | - | - | |
Vvi8g0008 | 961 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 746 | 758 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi8g0008 | 961 | Gene3D | Ribonuclease Inhibitor | 25 | 183 | IPR032675 | - | |
Vvi8g0008 | 961 | FunFam | Predicted protein | 184 | 405 | - | - | |
Vvi8g0008 | 961 | Pfam | Protein tyrosine and serine/threonine kinase | 629 | 895 | IPR001245 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi8g0008 | Vvi-Chr8 | 221918 | 228372 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi8g0008 | 19 | 961 | Receptor kinase-like Gene Family | AT1G79620 | 69.538 | 0.0 | 1368 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VIII-1 | Vvi8g0008 | PK_Tyr_Ser-Thr | 4.2e-48 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g0008 | - | - | vvi:100257037 | 1903.26 |