Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0004 ATGGCTGCTGCTTGTGCTCTTCTCGGTGACAATGGTAGAGAAATGGATGCCAATGGCAGCGCCGGCGCGAGCTTAACTCCTTTGACCAGTACCTCCATAAGCAGCGGCTGCGACCAACTAAATCATCATTTTCAGCGTGCAAAGATGGTGAGGAAGAGGACTGCTTCCGAAGTGGAGCTCCAAACTGGCTCTTATCACAGGTTTTCACGCCGACCTATCACCGCAATGAATCCTAATCCTCTCCACGACATGGGTGGGGGTGGCTCTTCTTTGTCTTTCCCATCTAATAATATTTCTTCAAGGGATGACAACAGCAACAGCAACAGTGCTACCCCAAATTCTACCCACGTCCCCAACCACTCCACTATCTCACCTTGTTCCACGAATTCCACTGTGACGTCTTCAACAAACTTGGCTTACATTGACACCTTGGCTCCTCTACCTCAGCCACCCGCCGTGTGTGGCTTCTCCGGCCTGCCCTTGTTTCCACCCGAAAGAAATAGAAACACCAGCGGCACCCTTGCTTCAGCTGCGTTTCTTCCGGCTCCTGCTGTACCCCCTCTCACGCCTCCTTCCATGGAAGACACTACAGCAACGGCCTGGATCGACGGCATCTTGAAGGACCTCATCCACAGCTCCACCAACGTTCCCATACCCCAGCTCATCCAAAATGTGAGGGAGATCATACACCCTTGTAACCCTAACCTGGCCTCCATCCTCGAGTACAGACTTCGTTCTTTGACTGACCCAAACCCCATCCCTAATTACCCGGAAAGGAGGAGGAAGGATGGGCCTCCGGTGGGTTTGCCGAGAGCATATCAGCAGCAAGGGCAGGTGCAAGTGTCTTCTTCTTCTGGCCTTAAGCTCTATCTGGACTCCGGTCTGGACAACCTTCACTATTCCCTTCCTGATTCTGCGGCTTCTCATGTGATGAATCATTACTTGAACTGGGGTTTGACGCAACCCCCCACCACCACCGCTGATGGACAAGCCCAGCACCTCAGTGACCACCAGGCCAGCCCTTCCTCTGTAGCTCCAGTTCTGTCATTGAATCAAGTGCATCCGCCGCAGCCGGCACAGCCCCAACAACCGCAAAATTCTCCTCAGTCAGCAGAGCCAGCCGGAGCGGCAGCAACAATAACAACAGCCCCGACGTCAGCTGCGATTGTAACTAAAGAGAAGAAGGAAGAGACGCGGCAGCAGAAGAGAGACGAGGAAGGGTTACACCTCCTGACCCTACTCCTGCAATGCGCCGAGGCCGTTTCAGCTGACAACTTTGAAGAGGCTAACAAGATGCTGCTTGAGATTTCTGAGCTCTCCACTCCCTTTGGAACTTCGGCGCAGCGGGTTGCGGCTTACTTCTCAGAAGCAATGTCAGCAAGGCTGGTAAGTTCGTGCTTAGGTATATATGCGACGCTGCCCACAGTGCCGCACAGCCAGAAATTGGTATCGGCCTTCCAGGTGTTCAACGGCATTAGCCCCTTCGTGAAGTTCTCGCATTTTACGGCGAACCAGGCCATACAGGAGGCGTTTGAGAGGGAGGAGAGAGTGCACATTATAGATCTGGACATCATGCAAGGCTTGCAGTGGCCGGGGCTTTTTCACATCCTAGCATCCAGACCCGGTGGCCCGCCCTTTGTTCGCCTCACTGGACTTGGGACCTCCATGGAGGCCCTGGAAGCCACAGGCAAGCGTTTGACTGATTTTGCTGAGAAATTGGGCCTTCCCTTCGAGTTCTTCCCTGTTGCCGAGAAAGTTGGGAACTTGGATCCCGAGAGGCTCAATGTGAGCAAGAGGGAGGCTGTTGCCGTCCATTGGTTGCAGCATTCCCTCTACGACGTCACAGGTTCCGACACCAATACGCTGTGGCTCTTGCAGAGATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTGTTTGACTCGCTTGGGGCGAGCTACGGAGAGGAGAGCGAGCAGAGGCACGCTGTGGAGCAACAGCTTCTATCCAGGGAGATCCGAAACGTGCTTGCTGTTGGTGGGCCTTCGAGGAGTGGAGACGTCAAGTTCAATAACTGGAGGGAGAAGCTTCAGCAATCGGGTTTCAGAGTGGTTTCACTGGCTGGGAATGCAGCCACTCAAGCCACTCTTCTCCTGGGAATGTTCCCGTCTGATGGTTACACATTGGTGGAGGACAATGGCACCCTCAAGCTTGGTTGGAAAGACCTCTGTTTACTTACTGCTTCTGCCTGGAGACCATTTCATGCTGCTGCTACCACCACACCCACCCACCACTACGCTCATTGA 2349 0.539 MAAACALLGDNGREMDANGSAGASLTPLTSTSISSGCDQLNHHFQRAKMVRKRTASEVELQTGSYHRFSRRPITAMNPNPLHDMGGGGSSLSFPSNNISSRDDNSNSNSATPNSTHVPNHSTISPCSTNSTVTSSTNLAYIDTLAPLPQPPAVCGFSGLPLFPPERNRNTSGTLASAAFLPAPAVPPLTPPSMEDTTATAWIDGILKDLIHSSTNVPIPQLIQNVREIIHPCNPNLASILEYRLRSLTDPNPIPNYPERRRKDGPPVGLPRAYQQQGQVQVSSSSGLKLYLDSGLDNLHYSLPDSAASHVMNHYLNWGLTQPPTTTADGQAQHLSDHQASPSSVAPVLSLNQVHPPQPAQPQQPQNSPQSAEPAGAAATITTAPTSAAIVTKEKKEETRQQKRDEEGLHLLTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYATLPTVPHSQKLVSAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGTSMEALEATGKRLTDFAEKLGLPFEFFPVAEKVGNLDPERLNVSKREAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEQRHAVEQQLLSREIRNVLAVGGPSRSGDVKFNNWREKLQQSGFRVVSLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWRPFHAAATTTPTHHYAH* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0004 782 MobiDBLite consensus disorder prediction 351 403 - -
Vvi8g0004 782 MobiDBLite consensus disorder prediction 249 271 - -
Vvi8g0004 782 MobiDBLite consensus disorder prediction 364 388 - -
Vvi8g0004 782 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 372 761 IPR005202 -
Vvi8g0004 782 MobiDBLite consensus disorder prediction 70 129 - -
Vvi8g0004 782 Pfam GRAS domain family 411 766 IPR005202 -
Vvi8g0004 782 ProSiteProfiles GRAS family profile. 401 766 IPR005202 -
Vvi8g0004 782 MobiDBLite consensus disorder prediction 324 343 - -
Vvi8g0004 782 MobiDBLite consensus disorder prediction 89 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0004 Vvi-Chr8 115793 118526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0004 372 767 GRAS Transcription Factor Family AT3G54220 84.000 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi8g0004 GRAS 1.6e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0004 - - vvi:100265598 1414.82