Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1559 ATGGATGGAGAAGGGAGTTCGAACCATATTGGTGGTATGAATGACCTTGAAAATGAGGGATTCCTGGATGGCAAGGAGATTGAGAGGTACTGGTCAGAGATATCGGAGAAAAGCATGATCATGTATAAAGAGCCGCTTCTGACAAAGAGGATGAACACTACCTCCCAGATTGCCATTGTTGGTGCTAATGTCTGCTCCATTGAGAGCCTTGACTATGAGATTGTTGAAAATGAACTATTTAAGCAAGACTGGAGGTCAAGGAAGAAGGCTCAGATATTTCAGTATGTGGTACTCAAGTGGGCACTTGCACTTCTTATAGGGCTTGGTACTGGACTTGTTGGCTTCTTCAACAATATTGCAGTTGAGAATATTGCTGGTTTCAAACTGCTGCTGACTAGTGATTTCATGTCTCAGAAAAAATATTTCAAGGCTTTTGCAGCATATGCTAGCTGCAATATAGGTTTGGCAGCTGCTGCAGCAGCCCTTTGTGCTTTCATTGCTCCAGCAGCAGCAGGGTCTGGTATTCCTGAAGTGAAAGCATATCTCAATGGTATAGATGCTCATTCAATATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCCATTCTTGGTGTTTCTGCTGGATTTGTGGTGGGTAAGGAAGGGCCAATGGTGCACACGGGTGCTTGCATTGCCTCTCTTCTTGGGCAGGGAGGCTCTCGCAAGTATCATTTAACGTGGAGTTGGCTAAAATACTTCAAAAATGATCAGGACAGACGAGACTTGATCACTTGCGGGGCTGCTGCCGGGGTGGCTGCTGCCTTCCGTGCTCCAGTGGGTGGTGTCCTCTTTGCCCTTGAAGAAGCAGCTTCATGGTGGCGAAGTGCTCTTCTTTGGAGGACATTTTTCACAACAGCTGTGGTTGCTATTGTTTTGAGAGCTTTCATAGAATATTGCTGGACTGGAAAATGTGGGCTATTCGGGCAAGGAGGTCTGATAATGTATGATGTCAGTGCTGCTACAGAAACATACGGTGTCCCAGATATACTAGCAGTACTATTTCTAGGAGTCATTGGCGGCATTTTTGGAAGCCTATACAATTATCTTGTGGACAAGGTTCTTCGAACTTATAGCATCATCAATGAAAAAGGTGCCCGTTCCAAAATATTACTTGTTGTTACTATCTGCATCTTGACAACCTGTTGCTCCTTTGGCCTGCCATGGTTTTCAAAGTGTATAGCCTGCCCTGCTGATCTGGCTGTGACCTGCTCCACAGAATCTGGCAACTTTAAACGCTTCCAGTGCCAATCAGGTTACTACAATGACCTCGCTTCCCTCTTCCTGAATACTAATGATGACGCTATTCGCAACCTATTCAGCACCAGCACTAGGCATGAATTTCGTATTTCCAGCCTCTTCATCTTCTTTGCTGCCATCTACTGTCTTGGCATTATCACGTATGGTATTGCTGTCCCCTCCGGTCTCTTCATTCCAGTTATACTAGCTGGAGCTTGCTATGGTCGTCTTGTTGGGAGACTCTTTGCATCTATATCTAAACTTGATACGGGACTCTTTGCCCTCCTTGGAGCTGCATCCTTCCTCGGTGGCACCATGAGAATGACAGTTTCCCTGTGTGTAATCCTGCTAGAGCTTACCAATGATCTACTATTGCTGCCCCTTGTCATGCTTGTTCTCCTTGTCTCAAAAACAGTGGCTGATAGCTTCAACAAAGGTGTCTATGACCAGATAGTAAAACTGAAGGGATTGCCTTACATGGAGGCCCATGCAGAGCCCTACATGAAGCATTTGGCTGCACGTGATGTTGTTTCAGGTCCATTGGTTACCTTCTCTGGCATTGAAAAGGTGGGGAACATAATGCATGCTTTGAGGACTACAGGGCATAACGGGTTCCCTGTGATTGACGAGCCGCCTTTCACAGATGCACCAGAACTGTGTGGACTTGTGTTGAGGTCTCATTTGCTTGTTCTACTAAAGGGGAAGAGTTTCTCTAGGAATCAGGTGCATTGTGGAGGGGAGATCTTGAGAAAGTATGCAGCATTGGACTTTGCCAAGGCAGGATCAGGAAAGGGGGTGAAACTGGAGGATTTGAATATTGAAGAGGAAGAGATGGAAATGTATGTCGATCTCCATCCTATAACAAATGCATCTCCATACACCGTGGTTGAGACGATGTCGTTAGCAAAAGCTGCAATTCTCTTTCGGCAAGTGGGCCTTAGGCACATGTGTGTGGTACCAAAGAGCCAAGGGAGGCCTCCAATTGTTGGAATCCTGACACGGCACGACTTCATGCCAGAGCACATATTGGGACTCTACCCTCATTTGAGTCCTCACAAGTAA 2343 0.4588 MDGEGSSNHIGGMNDLENEGFLDGKEIERYWSEISEKSMIMYKEPLLTKRMNTTSQIAIVGANVCSIESLDYEIVENELFKQDWRSRKKAQIFQYVVLKWALALLIGLGTGLVGFFNNIAVENIAGFKLLLTSDFMSQKKYFKAFAAYASCNIGLAAAAAALCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWSWLKYFKNDQDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAFIEYCWTGKCGLFGQGGLIMYDVSAATETYGVPDILAVLFLGVIGGIFGSLYNYLVDKVLRTYSIINEKGARSKILLVVTICILTTCCSFGLPWFSKCIACPADLAVTCSTESGNFKRFQCQSGYYNDLASLFLNTNDDAIRNLFSTSTRHEFRISSLFIFFAAIYCLGIITYGIAVPSGLFIPVILAGACYGRLVGRLFASISKLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDQIVKLKGLPYMEAHAEPYMKHLAARDVVSGPLVTFSGIEKVGNIMHALRTTGHNGFPVIDEPPFTDAPELCGLVLRSHLLVLLKGKSFSRNQVHCGGEILRKYAALDFAKAGSGKGVKLEDLNIEEEEMEMYVDLHPITNASPYTVVETMSLAKAAILFRQVGLRHMCVVPKSQGRPPIVGILTRHDFMPEHILGLYPHLSPHK* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1559 780 SUPERFAMILY CBS-domain pair 591 765 IPR046342 -
Vvi7g1559 780 SUPERFAMILY Clc chloride channel 77 589 IPR014743 -
Vvi7g1559 780 CDD ClC_6_like 68 587 - -
Vvi7g1559 780 FunFam Chloride channel ClC3 91 411 - -
Vvi7g1559 780 PRINTS Chloride channel signature 518 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1559 780 PRINTS Chloride channel signature 263 282 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1559 780 PRINTS Chloride channel signature 486 506 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1559 780 PRINTS Chloride channel signature 168 185 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1559 780 PRINTS Chloride channel signature 536 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1559 780 PRINTS Chloride channel signature 199 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1559 780 PRINTS Chloride channel signature 574 588 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1559 780 Pfam Voltage gated chloride channel 156 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1559 780 PRINTS Plant CLC chloride channel signature 298 308 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1559 780 PRINTS Plant CLC chloride channel signature 316 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1559 780 PRINTS Plant CLC chloride channel signature 438 454 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1559 780 PRINTS Plant CLC chloride channel signature 284 292 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1559 780 PRINTS Plant CLC chloride channel signature 73 81 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1559 780 Pfam CBS domain 718 764 IPR000644 -
Vvi7g1559 780 Gene3D - 588 770 IPR046342 -
Vvi7g1559 780 Gene3D Clc chloride channel 91 587 - -
Vvi7g1559 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 36 770 - -
Vvi7g1559 780 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 767 - -
Vvi7g1559 780 ProSiteProfiles CBS domain profile. 714 777 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1559 Vvi-Chr7 20707996 20715293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1559 6 780 Ion Channels AT5G49890 73.077 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1559 K05016 - vvi:100259734 1461.82