Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1550 ATGGTGGAAGAAGAGAAGAGGAGGTTGGCGATCATCAGAAGGAGTAAGTTCATCCTCCAGTGCCCTAGATTGTTATCTAGGTTGAATCCTCCCTTGTCTTCGTCTTCGTCTTCATCAGTCAAGATAATGACGGTAACAAAGCGGGCCAAACAGGGTAGTAATAGTAATTGGCAGGCCGCGTGCAGAAGGCGCCACTTCCTGAAAGGTGCGGTGAAGAGCCTGCGTGGAGGTGATGGGGTTGCTTGGACTCGGAAACACAATCTTGGTAAAGGCAGTTTTGGTTTTGTTTCTTTTGCGACATCCAGAGCCCCCATCATTGTGTGTCATGATGATGATGATGGTGGTGGTGGTGGTGGTGGGTCTGACTCCGTTTTGACTAATTTCGCGGTGAAGTCTGCTGAAGTCTCCATGTCGTCTTCCCTTAGGAGAGAGACCAAGATCTTGTGGGACCTGAAACTAAGTCCTCATGTAGTTCAATCTCATGGAGACGAGATGACCCAGTCAAGGTTTGATAACAGAACCTACTACAATATCTTGATGGAGTTTTGTGAAGGTGGTAGCTTGGCCAAATGGATTAAGAAGTTGGGTAATCCTGGATTGAGTGAATACCATGTTAGGTTATTTGCTAGAGACATGGTTTTGGGACTTGTCCATGTTCATAGCCGGGGTTATGTGCACTGCGATATCAAGCCTTCCAACATTCTGCTTGCAAGAGATGGTGATGGTTATACTGCAAAGATTGCAGATTTTGGACTGGCAAAGAGGGTGGCTGCCCATCCTAATGGAGAAGAAGATGATGATGAGTTGGGGGCCGTGAGAGGAACTTACCGGTACATGGCACCAGAAACTGTGAGCCATAGGGTACAGGATCAGTATGCTGATATTTGGGCACTTGGGTGCACTGTTCTTGAGATGATGACTGGGAAGCCGCTGTGGGATTCGCAGGCGGACTTGAGTCATGATTCGCAAATTAAAGATATTCTCCAGCGGATTGGAAACAGCCCTGAATGGCCCGAATTGCCAAGTGACATATCAAGGGATGGGAAAGATTTCTTGGAGAGGTGTTTGGTGAGGAGTCTTAGGAGTAGATGGTCTGCTGAGATGCTAATTCATCATCCTTTTTTATCATTGGATCTCACTGCAAGAAGTTGA 1152 0.4696 MVEEEKRRLAIIRRSKFILQCPRLLSRLNPPLSSSSSSSVKIMTVTKRAKQGSNSNWQAACRRRHFLKGAVKSLRGGDGVAWTRKHNLGKGSFGFVSFATSRAPIIVCHDDDDGGGGGGGSDSVLTNFAVKSAEVSMSSSLRRETKILWDLKLSPHVVQSHGDEMTQSRFDNRTYYNILMEFCEGGSLAKWIKKLGNPGLSEYHVRLFARDMVLGLVHVHSRGYVHCDIKPSNILLARDGDGYTAKIADFGLAKRVAAHPNGEEDDDELGAVRGTYRYMAPETVSHRVQDQYADIWALGCTVLEMMTGKPLWDSQADLSHDSQIKDILQRIGNSPEWPELPSDISRDGKDFLERCLVRSLRSRWSAEMLIHHPFLSLDLTARS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1550 383 Gene3D Transferase(Phosphotransferase) domain 1 81 382 - -
Vvi7g1550 383 SMART serkin_6 82 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1550 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vvi7g1550 383 SUPERFAMILY Protein kinase-like (PK-like) 83 376 IPR011009 -
Vvi7g1550 383 ProSiteProfiles Protein kinase domain profile. 82 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1550 383 Pfam Protein kinase domain 130 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1550 383 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 49 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1550 Vvi-Chr7 20595922 20597073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1550 82 378 MAP Kinase Kinase Kinase AT4G36950 40.067 5.98e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi7g1550 Pkinase 5.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1550 - - vvi:100247767 728.398