Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1545 ATGAGCATTTCAAGGCAACAAGTGGAAGTACAAGTCCCAAAAACCAGCAGTACCCACACAAGAGGAAACGGGCATGATGATGAATCCCCATCTCCTTCCCCTCCATTCAAAGGGGGCATGCACCAGACCTACAAGAAAGCAGCAACAGAAGGGGAGTTTTCCTACACCTTCGGCCATCTTCAACCCCTCAACAATACTGAAAGAAAACTCATTTTAGGCCATCACAATAAGCCAATTATGGGGACAAAGTCCATAGAATATCCCACAGGAACACTGGTTTCCTCAAGAGCAGCAGCCCCTCAACACATGATAATGGGATCAATCCCATCAGAGTCTGATGAGCAAGAAGAGATTGGACGTGGTGGGCCAAAGCCAAGTAGTGATCAGCAAGTAAAGAAGAGGTTCAGAACCAAGTTCACCCAAGAGCAGAAGGAGAAGATGTTGAGCTTTGCAGAGAGGGCTGGTTGGAGGATACAAAAGCAGGAGGAATCGCTAGTGCAGCAGTTCTGCCAAGAGATTGGAATCAAGAGGAGAGTCCTCAAGGTGTGGATGCACAACAACAAAAACTTGGCCAGGAAAAACCCCTCCACAGATTGA 597 0.474 MSISRQQVEVQVPKTSSTHTRGNGHDDESPSPSPPFKGGMHQTYKKAATEGEFSYTFGHLQPLNNTERKLILGHHNKPIMGTKSIEYPTGTLVSSRAAAPQHMIMGSIPSESDEQEEIGRGGPKPSSDQQVKKRFRTKFTQEQKEKMLSFAERAGWRIQKQEESLVQQFCQEIGIKRRVLKVWMHNNKNLARKNPSTD* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1545 198 ProSiteProfiles 'Homeobox' domain profile. 130 194 IPR001356 GO:0003677
Vvi7g1545 198 NCBIfam homeobox domain, ZF-HD class 132 189 IPR006455 -
Vvi7g1545 198 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 84 189 - -
Vvi7g1545 198 FunFam Zinc-finger homeodomain protein 2 121 193 - -
Vvi7g1545 198 MobiDBLite consensus disorder prediction 113 133 - -
Vvi7g1545 198 MobiDBLite consensus disorder prediction 1 44 - -
Vvi7g1545 198 SUPERFAMILY Homeodomain-like 120 193 IPR009057 -
Vvi7g1545 198 MobiDBLite consensus disorder prediction 108 133 - -
Vvi7g1545 198 MobiDBLite consensus disorder prediction 1 19 - -
Vvi7g1545 198 Gene3D - 119 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1545 Vvi-Chr7 20539010 20539762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1545 41 193 ZF-HD Transcription Factor Family AT2G02540 47.429 2.40e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1545 - - vvi:100266688 369.777