Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1542 ATGGTGGTAAACGGCCGCCCGATGAAGCGTATGAAGATGAGAGTCACAGCCGATCTCTACGACTTCCTGGCCTTTCCTGCCGCCGGTGACTTCGCGGAGGGCCCGTTTCGCACGACCGTAAAGTCGTTCCTGACGAAGCACGCTCTGCTGCCTCCTCCAGGGTCTCTGTTGCCTCACCTGCTGACGTGGCAGATCTGGTTCCGAGTCGGAGAGGCGGTTGTCGACGGAGGCGAGTCGTCCCCGGCTGTCGTCTGCCTCGATGTCGTGGAAGAGGACGTGGCGAGATCCAGATCCGTCTACTGTGACCAGTGCCGAGTCGTCGGTTGGAGTGGCAATCCAGTATGTACAAAACGATACCATTTCATTATAAAGGCTGATGGGAACTCCATTGGTGGGTATTACAAGTCATGTACAAGTTGTGGGGTTGTTCTTCATTTGTCTGATTCCAGGTGCAAGTCATGCAACAAATTAATGACAGCTGATGATACTGAAGACTGGGTCTATCATCAATTGGACGACACCACTCATCTTTTGCATGGTGTTGTCCATGCAAATGGTTATGGGCACCTTCTTAGAGTCAATGGCAGAGAAGGTGGCTCAAGGATTCTTTCTGGATGTCATATCATGGACTTTTGGGATCGACTTTGTAAAAATCTTGGAGTCAGAAAGGTCAGTGTGATGGATGTGTCCAAAAAGCATGGGTTGGAGTTCCGGCTGCTTCATGCCATCACCAAAGGCCATCCATGGTATGGTGAGTGGGGTTATGAGTTTGGAGCTGGTAGTTTTGCTCTCACGCTCGATGCCTATAAAGCGGCAGTTGAAACCCTCTCCACTCTACCCTTGTCCATCTTTGTTTCTCAAGGAAGGAAACCACGCACTCACTTGCAGGACCTAATTTCATACTACCAGTCATTATCAGAACGTGAACTGGTACATGCAAGAGATCTCTTTTGGTTTTTGATGAGTTTGATCCATGATGCCCACAAGTCTTCCCCAACAAAGAATGATATCACCTGTAAGAAGCGTCGGTCTTGCACCCCAGGGATCTTGTGTGCATGGACTAGAAATGATATCGAACGTGTGGAAGAAGCCATGTTTAGAGTGCTTAGAGCAGTTACCGGATCAAACTGGGTCAGTTGGCGTGCTCTAAGGGGTGCAGTTTGCAAAGTGGCTCCTCCAGAGCTTTTGGATTACTGCCTCAAGGAGCTTGGAGGGAAACTGACATCTTATGGTGTGGTTGTTCAGGTCCGATGCAATCCTGATTCAGGTGCTGTTGAGTACAGACTTGATCCTGGAAGCATTCCCTCCAATGGAATTGCTGCTTGCACTGATTTTAATCTCTCTAATTGCCGATCAGAGCAACATCTCCTGCAGGACCTTAGATTCTTGTATGAAGCCATTCTCAATCCTCAGACCATGCCAAGCTATGGGCCTCAGGCAACAAGGGACCTTGCTGTCAGCTCAGCTGCAAAGCTCCTTGACTGCAAGCAGTTTGTGAAAGACTACAGGCCCGAGAAGGGGTTGTCAATCACAAATCCATTTGGAGTTCACCTCTCATGCCTAGTGGAACTCATGGAGCTATCTGAAGAGGGTGATACAAAACCACCTCCAGAACTAATTGTTCTATCTCCAAACGCCACCATTTCCGACCTCAAGCTTGAAGCATCAAGGGCTTTTCAGGATGTATATTTGATGTTCAAAAGATTCAAAGCTGAAGAGCTGGTCGGCTATGCTGGGGTGGATGAGTCTACCCAGCTCAAGCTCTTGTTAGGTTCAATTGAAACGGTTGAAGTCCGAGGAAGATGCCTTGGGAAGAATGGCCTGAGTAGGTTTAGAATGGAGAGAGGACAGGAGAGATGGACAGTTGATTGCAGTTGCGGAGCGAAGGACGATGATGGGGAGAGAATGTTGGCCTGTGATGGGTGTGGTGTATGGCAGCACACTCGGTGCGCTGAGATTCCAGACTCTGCTGCAGTCCCTGCAAGGTTCATTTGCTGGAGATGTGGAAGCTCAGGCCAAATGCCCACCCCAGCAAGTGAGCATTGCAAGGATGAGACGGGGTCTGGCGGGGTGGGGTGA 2079 0.4969 MVVNGRPMKRMKMRVTADLYDFLAFPAAGDFAEGPFRTTVKSFLTKHALLPPPGSLLPHLLTWQIWFRVGEAVVDGGESSPAVVCLDVVEEDVARSRSVYCDQCRVVGWSGNPVCTKRYHFIIKADGNSIGGYYKSCTSCGVVLHLSDSRCKSCNKLMTADDTEDWVYHQLDDTTHLLHGVVHANGYGHLLRVNGREGGSRILSGCHIMDFWDRLCKNLGVRKVSVMDVSKKHGLEFRLLHAITKGHPWYGEWGYEFGAGSFALTLDAYKAAVETLSTLPLSIFVSQGRKPRTHLQDLISYYQSLSERELVHARDLFWFLMSLIHDAHKSSPTKNDITCKKRRSCTPGILCAWTRNDIERVEEAMFRVLRAVTGSNWVSWRALRGAVCKVAPPELLDYCLKELGGKLTSYGVVVQVRCNPDSGAVEYRLDPGSIPSNGIAACTDFNLSNCRSEQHLLQDLRFLYEAILNPQTMPSYGPQATRDLAVSSAAKLLDCKQFVKDYRPEKGLSITNPFGVHLSCLVELMELSEEGDTKPPPELIVLSPNATISDLKLEASRAFQDVYLMFKRFKAEELVGYAGVDESTQLKLLLGSIETVEVRGRCLGKNGLSRFRMERGQERWTVDCSCGAKDDDGERMLACDGCGVWQHTRCAEIPDSAAVPARFICWRCGSSGQMPTPASEHCKDETGSGGVG* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1542 692 ProSitePatterns Zinc finger PHD-type signature. 624 668 IPR019786 -
Vvi7g1542 692 Pfam PHD-finger 624 669 IPR019787 -
Vvi7g1542 692 SMART PHD_3 623 669 IPR001965 -
Vvi7g1542 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 673 IPR013083 -
Vvi7g1542 692 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 676 - -
Vvi7g1542 692 CDD PHD_MMD1_like 623 668 - -
Vvi7g1542 692 ProSitePatterns Uncharacterized protein family UPF0054 signature. 179 189 IPR020549 -
Vvi7g1542 692 SUPERFAMILY FYVE/PHD zinc finger 613 668 IPR011011 -
Vvi7g1542 692 MobiDBLite consensus disorder prediction 672 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1542 Vvi-Chr7 20499375 20503782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1542 80 668 PHD Transcription Factor Family AT5G22260 30.274 2.58e-81 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi7g1542 PHD 4.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1542 - - vvi:100256176 1434.08