Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1533 ATGAAGAAATCGTCCGCAGGAGCACCATCAAAACCCACAAAACCGGCATGGGTCCTCCCCTACAAGACCCAAGACTTGAGAACCCTGTACACCATAGGTCAGAAGCTGGGTCAAGGGCAGTTTGGGACAACATTTCTGTGCACAGACAAGGCCACGGGCCACAACTATGCCTGCAAATCCATCCCAAAGAGGAAGCTCTTCTGCAAGGAGGACTATGATGATGTGTGGAGGGAGATTCAGATAATGCACCACTTGTCTGAGCACCCAAATGTGGTGAGGATCAGGGGAACCTATGAGGACCCCGTGTTTGTGCATTTGGTCATGGAGTTGTGTGAGGGAGGTGAGCTTTTTGATAGGATTGTGCAGAGGGGGCATTACAGTGAGAGAGAGGCTGCAAAGCTGATCAAGACCATTGTTGGGGTGGTTGAGGGGTGTCATTCACTTGGGGTTATGCATAGGGATCTCAAGCCCGAGAACTTCTTGTTTGATACCACTGCTGAGGATGCTGCTCTCAAGGCCACTGATTTTGGGTTGTCTGTTTTCTATAAGCCAGGTGAAACCTTTTCTGATGTAGTTGGGAGTCCCTACTATGTTGCACCAGAGGTGTTGTGCAAGCATTATGGACCTGAAGCAGATGTTTGGAGTGCGGGAGTTATTTTGTATATCTTACTTAGTGGGGTTCCACCTTTTTGGGCAGAGACTGAAACAGGAATCTTCCGTCAGATACTACAAGGAAAGTTAGATTTTGAATCTGAACCGTGGCCTTGCATTTCAGAAACTGCCAAGGAACTATTGCGGAAAATGCTTGATAGGAATCCAAAGAAAAGGCTAACTGCTCATGAAGTCCTTTCCCACCCATGGGTCGTAGATGATAGAATGGCCCCAGATAAACCTCTTGATTCTGCAGTGTTATCACGCCTGAAGCAGTTCTCTGCAATGAACAAACTTAAAAAGATGGCTTTGCGTGTCATAGCAGAGGGGCTTTCTGAAGAGGAGATTGGTGGTTTGCGGGAGTTGTTCAAAATGATAGACACGGACAATAGTGGAACAATAACGTTTGATGAATTGAAAGATGGCTTAAAAAGAGTGGGCTCTGAACTAATGGAGTCTGAAATCAGGGATCTCATGAATGCAGCTGACATTGACAACAGTGGAACAATAGATTATGGGGAATTCCTTGCTGCTACTGTGCACTTGAATAAGTTGGAGAGGGAGGAAAATTTGGTGTCAGCATTCTCCTTTTTTGACAAAGATAAAAGTGGTTACATTACCATTGATGAGCTTCAACAAGCTTGTAAAGAGTTTGGCTTAAGTGAGGCCCATCTTGATGACATGATCAAAGAAATTGACCAAGATAATGATGGACAGATAGATTACGGGGAATTTGCTGCAATGATGAGGAAGGGCAATGGAGGAATCGGGCGGAGAACCATGAGAAACAACTTAAACTTGGGAGATGTTCTAGGGATACCAGACATGCGCTTGACAAACTGA 1494 0.4545 MKKSSAGAPSKPTKPAWVLPYKTQDLRTLYTIGQKLGQGQFGTTFLCTDKATGHNYACKSIPKRKLFCKEDYDDVWREIQIMHHLSEHPNVVRIRGTYEDPVFVHLVMELCEGGELFDRIVQRGHYSEREAAKLIKTIVGVVEGCHSLGVMHRDLKPENFLFDTTAEDAALKATDFGLSVFYKPGETFSDVVGSPYYVAPEVLCKHYGPEADVWSAGVILYILLSGVPPFWAETETGIFRQILQGKLDFESEPWPCISETAKELLRKMLDRNPKKRLTAHEVLSHPWVVDDRMAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAEGLSEEEIGGLRELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIRDLMNAADIDNSGTIDYGEFLAATVHLNKLEREENLVSAFSFFDKDKSGYITIDELQQACKEFGLSEAHLDDMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRNNLNLGDVLGIPDMRLTN* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1533 497 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Vvi7g1533 497 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Vvi7g1533 497 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Vvi7g1533 497 FunFam calcium-dependent protein kinase SK5 325 397 - -
Vvi7g1533 497 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509
Vvi7g1533 497 ProSiteProfiles Protein kinase domain profile. 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1533 497 Pfam EF-hand domain pair 336 396 IPR002048 GO:0005509
Vvi7g1533 497 Pfam EF-hand domain pair 406 467 IPR002048 GO:0005509
Vvi7g1533 497 FunFam CDPK-related kinase 3 22 190 - -
Vvi7g1533 497 FunFam Calcium-dependent protein kinase 1 32 115 - -
Vvi7g1533 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Vvi7g1533 497 FunFam Calcium-dependent protein kinase SK5 198 293 - -
Vvi7g1533 497 CDD EFh 336 395 IPR002048 GO:0005509
Vvi7g1533 497 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Vvi7g1533 497 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Vvi7g1533 497 ProSitePatterns EF-hand calcium-binding domain. 344 356 IPR018247 -
Vvi7g1533 497 Gene3D - 401 494 - -
Vvi7g1533 497 SMART efh_1 441 469 IPR002048 GO:0005509
Vvi7g1533 497 SMART efh_1 335 363 IPR002048 GO:0005509
Vvi7g1533 497 SMART efh_1 407 435 IPR002048 GO:0005509
Vvi7g1533 497 SMART efh_1 371 399 IPR002048 GO:0005509
Vvi7g1533 497 SUPERFAMILY Protein kinase-like (PK-like) 30 299 IPR011009 -
Vvi7g1533 497 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 462 - -
Vvi7g1533 497 ProSiteProfiles EF-hand calcium-binding domain profile. 439 472 IPR002048 GO:0005509
Vvi7g1533 497 Gene3D Transferase(Phosphotransferase) domain 1 117 327 - -
Vvi7g1533 497 SMART serkin_6 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1533 497 Gene3D Phosphorylase Kinase; domain 1 32 116 - -
Vvi7g1533 497 CDD STKc_CAMK 30 287 - -
Vvi7g1533 497 SUPERFAMILY EF-hand 327 467 IPR011992 -
Vvi7g1533 497 CDD EFh 408 467 IPR002048 GO:0005509
Vvi7g1533 497 Pfam Protein kinase domain 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1533 497 Gene3D - 328 400 - -
Vvi7g1533 497 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Vvi7g1533 497 FunFam Calcium-dependent protein kinase SK5 401 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1533 Vvi-Chr7 20409685 20417141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1533 9 496 EF-hand Containing Proteins AT4G09570 78.208 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi7g1533 Pkinase 3.5e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1533 K13412 - vvi:100240787 1011.13