Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1525 ATGGGTAGATCTCCCTGCTGTGAGAAGGAACACACCAACAAAGGTGCATGGACCAAGGAGGAGGACCAGCGCCTCATCGCCTATATCAAGACTCATGGTGAAGGCTGTTGGAGGTCTCTCCCCAAAGCTGCCGGGCTGCTGAGATGTGGGAAGAGTTGCAGGCTTAGATGGATAAACTATCTCAGGCCTGATCTGAAGAGAGGGAACTTCACTGACGAAGAAGATGAGCTCATCATCAACCTCCACAGCTTCTTTGGAAACAAATGGTCTCTCATTGCGGGGAGATTACCGGGAAGAACTGATAATGAGATCAAGAACTACTGGAACACCCACATCAAGAGGAAGCTCTACAGCCGGGGAATCGACCCCCAAACTCACCGCCCCCTCAGCTCCGCCGCCTCCACTGCGGCCACTTCCGCCACCATTAACAACAGCAAAAGAAGCAACAGCACTAGCAAGAACACGAGCAATTCTGAATCAGAAGCTGCCAAAACTCCTCCAGTGCAGCCTCTGAACACTAGAAATGTCAATGGCAACATCAAAGCCGATTCGGCGGAAGAGTACTCAAACAGCAGCAGTGGTGTCACCACTGAAGAACTCTACCCACAACTTAACCTTGAGCTCTCCATAGGCCTTCCTCATCGCCCTCAGATTCAAGCTACAAATGTAAAGGAACCAAAGAAACAACCGCAAGAGCAGCTTCCTTTTCAGTTCTTTGGGGCTTCATCAGCCTCAACCAAAAACCATCAATCTTCATGTTTCTGTCAAAATCTAGGGTATCAGAACAAAACCCAAGAATGTAACTGCAAATCAGTGACAAGGATGATCCCTGCAGATGATCTCTACAGATATTACACGGCCTTGGATTCATGA 873 0.488 MGRSPCCEKEHTNKGAWTKEEDQRLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIINLHSFFGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLSSAASTAATSATINNSKRSNSTSKNTSNSESEAAKTPPVQPLNTRNVNGNIKADSAEEYSNSSSGVTTEELYPQLNLELSIGLPHRPQIQATNVKEPKKQPQEQLPFQFFGASSASTKNHQSSCFCQNLGYQNKTQECNCKSVTRMIPADDLYRYYTALDS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1525 290 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi7g1525 290 FunFam MYB-related transcription factor 13 66 - -
Vvi7g1525 290 CDD SANT 69 112 IPR001005 -
Vvi7g1525 290 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi7g1525 290 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Vvi7g1525 290 MobiDBLite consensus disorder prediction 124 176 - -
Vvi7g1525 290 CDD SANT 16 61 IPR001005 -
Vvi7g1525 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi7g1525 290 MobiDBLite consensus disorder prediction 119 176 - -
Vvi7g1525 290 Gene3D - 14 66 - -
Vvi7g1525 290 Gene3D - 69 166 - -
Vvi7g1525 290 SMART sant 66 114 IPR001005 -
Vvi7g1525 290 SMART sant 13 63 IPR001005 -
Vvi7g1525 290 FunFam Transcription factor MYB7 69 164 - -
Vvi7g1525 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi7g1525 290 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi7g1525 290 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi7g1525 290 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1525 Vvi-Chr7 20167647 20168886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1525 1 213 MYB Transcription Factor Family AT4G38620 62.617 8.13e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi7g1525 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1525 K09422 - vvi:100261376 575.089