Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1520 ATGGAGAAGTATGAAATGGTGAAGGATCTTGGATCTGGCAACTTTGGTGTTGCCAGGTTGATGAGGGTCAAGGAGACCAAAGAGCTTGTTGCCATGAAATTCATTGAGCGTGGCCACAAGATAGATGAAAATGTGGCCAGAGAGATTATAAATCATAGATCGCTTCGGCACCCGAATATAATCAGGTTCAAGGAGGTGGTTCTGACTCCCACTCATTTGGGTATTGTGATGGAGTACGCTGCTGGTGGTGAGCTCTTCGAGCGAATCTGCAATGCCGGTAGATTCAGTGAAGATGAGGCTAGATATTTCTTCCAGCAGCTGATTTCAGGTGTCAGTTACTGCCATTCAATGCAAATTTGTCATAGAGATTTGAAGCTGGAAAATACGCTTTTGGATGGAAGCCCTGCACCACGCTTGAAAATCTGTGATTTTGGTTACTCTAAGTCATCTCTGCTGCACTCAAGGCCCAAATCAACGGTAGGAACGCCAGCATATATAGCACCTGAAGTTCTTTCTAGGCGAGAATATGATGGCAAGTTGGCAGATGTATGGTCTTGTGGAGTGACTCTCTATGTTATGCTGGTGGGAGCATACCCTTTTGAAGACCCGGATGACCCCAAAAACTTTAGAAAAACGATTGGGCGAATCATGGCTGTTCAATACAAAATTCCAGAATATGTTCACATATCTCAAGATTGCAAACAGCTTCTTTCCCGCATTTTTGTTGCAAATTCCTCCAGGAGAATTACAATTAAAGAAATCAAGAACCACCCCTGGTTCTTAAAAAACTTGCCAAGGGAGCTAACAGAGTCTACTCAAGCCAACTATTACCAAAGAGACAACTTGAGCTTCTCTCTTCAAAGTGTTGAGGAGATAATGAAAATTGTGGGGGAGGCGAGAATTCGTTGTCCATCATCTAGGTCCATTGGGGGCTTTGGGTGGGGAGCAGAAGAGGGTAAAGGCGGTGAGGACGATCTAGACGTAGAGGAGGAAGAAATAGAAGAAGAAGACGAGTACGACAAGAGGGTTAGGGAAGTCCATGCAAGCGGAGAATTTCACGTTAGTTAA 1068 0.4438 MEKYEMVKDLGSGNFGVARLMRVKETKELVAMKFIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIMAVQYKIPEYVHISQDCKQLLSRIFVANSSRRITIKEIKNHPWFLKNLPRELTESTQANYYQRDNLSFSLQSVEEIMKIVGEARIRCPSSRSIGGFGWGAEEGKGGEDDLDVEEEEIEEEDEYDKRVREVHASGEFHVS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1520 355 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vvi7g1520 355 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1520 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi7g1520 355 MobiDBLite consensus disorder prediction 322 338 - -
Vvi7g1520 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vvi7g1520 355 MobiDBLite consensus disorder prediction 339 355 - -
Vvi7g1520 355 PANTHER SERINE/THREONINE KINASE 2 294 - -
Vvi7g1520 355 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Vvi7g1520 355 CDD STKc_SnRK2 3 259 - -
Vvi7g1520 355 MobiDBLite consensus disorder prediction 314 355 - -
Vvi7g1520 355 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1520 355 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1520 355 SUPERFAMILY Protein kinase-like (PK-like) 1 291 IPR011009 -
Vvi7g1520 355 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vvi7g1520 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1520 Vvi-Chr7 20085122 20090573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1520 3 275 CBL-interacting serine-threonine protein kinases AT4G24400 42.403 4.81e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vvi7g1520 Pkinase 8.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1520 K14498 - vvi:100249013 662.144