Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1513 ATGCCTCTCCTGAAAAGAAAGCCTTATGTGCTGTCAGAACCGCCTACAGATTTGAAGCCTCGCCAGCATGTGTATCAAATTCGTTTCACAAGAGAGATATTTAGAGACTATGATGAATATTTGACCAAGATTAATCTATACCGTCAGAGAGTTTGGACATGTAAAGTTACTGCAAAAACTAACTTGACGTATGAGGAAGCGTTGGTATCAGAGCTCAATGCAACTGAAAAAATTCAGAAGTTCCCATATGAGCTAATTCCATCTGTGCTGCAAACTGTTCAATTCAGCATGCTCTCATTAAAAGATCTCGTTAACACAATAACTGTGAAGTTACAGTACCATTTGTTGGTAGGCGAGGAATTGTATGGAAAGAGGGATGATTGTGTATCTTTATGCCAAATAATAAAAGTTCTGGAGGAAGGTGACAACAAAACCCGGTATGAGGTGGCTTGGCTTGACAAAGATAAGAAAAGAATTGGAACTGCAGTAGTAAATGCAGAAGATCTGATACGGAAAAAGCTGCCTTTTACTAGAGAAGTTCTGAAGTCCTTTATACGAGAATCTACTTACCGAAATGTTCCTTGGGTGCTTCATGACAAATGGGCACAGGAGCATGCAATCTCAACTGATCCTCCGGAAGAGATAAGAAGCAAATATTTCTTCAAGGATGGTCATCTAGTCATCAATAAGAAAAAACGGAAAACTGAGGATGATAAGCAAAACATAACGGAAACAAGAAATGGGCAAGTTGGGAAATCTAAGAATAAACTGGAAAGGGAGAAATCTGAAGGTTTGGTCATGGAAAGGAGTGCTGAAAAAGAAGATTTTGAACCAAAGGAAGAACCCATCAACTATCCAATTGATGATCTGTTGGTGCGGCCTGGTCCAGATGATCCAGTTTTCACTGACCGACCCTCTCCATCAAGGGATTTCACTGTTCCAATGGATTGTGTTGGGGATCTTTTAATGGTTTGGGATTTTGTTTCATCTTTTGGCAGGCTGTTGCATTTATTCCCATTCTCTCTCCAAGATTTTGAGAATGCCATATGCCACAAAGACAGCAATCTGATTATCATTGTGGAAACTCATTCTGCTCTTCTTCGCTTGCTTGTAAAAGATGATGGGCAATATTTCACTGCTATACAGGAAAAAAAACGGAAGCCAAAGATAACGATAATCACTTGGACAGAGTATCTGTGTGATTTCTTAGAAATGGTAGAAATGCCTGAACTGTCTTCTTGCATACCAACAATTAAGCGAGGTCATTATGGCCTTTTGGAAACTCATGCTAAGTTAGGAATATTTAGAGAGTTGATTGCCCAAACCCTTGCAACTGATCTTGTTAGGAAGAAGTTGGATGAATATATTGAAGAGCGCCAGACACTTGCAGCCACAAAAAGGGGTGAAGCAATTGAAGAAGGTAGAAAGAAAAGAGAAGAGAAGGAACGGTTGAAGGCAGAATCTGCTGCTGTTCAGGAAGCTAATGGGCATGGTCTGGAGAATAACAATACCAGTGATGATGCATTAGGAAACAGTTCCAAGAAGCAGAAGGTGGATGTGAAAGACCAGCCAGAAAGTGGAAAAGATCCCTCTAAGAAGGAAGCAAACAAAATGACTCTGCAACAACCAAAGGCTGATAAGAAGGAAACAACTGAAAAGAAGAGTATAGAACAGAGGAGAGAATATCTCCAACGAGAGATAGACAAACGGTTTATACGCACAGAGCCCTTGGGAAAAGATAAAGACTATAATCGGTATTGGTTTTTCCGGCGGGATGGAAGGATATTTGTTGAGAGTTGGGACTCCAAGCAATGGGGCTACTACAGTACCAAGGAAGAGCTCGATGCATTCAAAGGATCACTGAACCGCAAAGGTGTCAGAGAGAGGGCTCTTCAAAGCCAGCTAGAAAAATCTAATAACAAAATATGCTTTGAACTGCAAAAGAGATCAAAAGATGTAGCGCAAAAGATAGCAATGGAAGAGGCTGTGCTGCGGAGGTCTACCCGGGTGAGGGCTCCACCCAGGGACAACCCTGCTGTTGCTTTCCTCAAGTATGTCAACAAGTGGAAGGAAGACTAA 2079 0.4122 MPLLKRKPYVLSEPPTDLKPRQHVYQIRFTREIFRDYDEYLTKINLYRQRVWTCKVTAKTNLTYEEALVSELNATEKIQKFPYELIPSVLQTVQFSMLSLKDLVNTITVKLQYHLLVGEELYGKRDDCVSLCQIIKVLEEGDNKTRYEVAWLDKDKKRIGTAVVNAEDLIRKKLPFTREVLKSFIRESTYRNVPWVLHDKWAQEHAISTDPPEEIRSKYFFKDGHLVINKKKRKTEDDKQNITETRNGQVGKSKNKLEREKSEGLVMERSAEKEDFEPKEEPINYPIDDLLVRPGPDDPVFTDRPSPSRDFTVPMDCVGDLLMVWDFVSSFGRLLHLFPFSLQDFENAICHKDSNLIIIVETHSALLRLLVKDDGQYFTAIQEKKRKPKITIITWTEYLCDFLEMVEMPELSSCIPTIKRGHYGLLETHAKLGIFRELIAQTLATDLVRKKLDEYIEERQTLAATKRGEAIEEGRKKREEKERLKAESAAVQEANGHGLENNNTSDDALGNSSKKQKVDVKDQPESGKDPSKKEANKMTLQQPKADKKETTEKKSIEQRREYLQREIDKRFIRTEPLGKDKDYNRYWFFRRDGRIFVESWDSKQWGYYSTKEELDAFKGSLNRKGVRERALQSQLEKSNNKICFELQKRSKDVAQKIAMEEAVLRRSTRVRAPPRDNPAVAFLKYVNKWKED* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1513 692 Coils Coil 467 487 - -
Vvi7g1513 692 Pfam DDT domain 316 373 IPR018501 -
Vvi7g1513 692 MobiDBLite consensus disorder prediction 251 278 - -
Vvi7g1513 692 SMART testlast3 315 376 IPR018501 -
Vvi7g1513 692 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 572 638 IPR028941 -
Vvi7g1513 692 ProSiteProfiles DDT domain profile. 315 376 IPR018501 -
Vvi7g1513 692 MobiDBLite consensus disorder prediction 495 511 - -
Vvi7g1513 692 MobiDBLite consensus disorder prediction 232 278 - -
Vvi7g1513 692 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Vvi7g1513 692 MobiDBLite consensus disorder prediction 466 488 - -
Vvi7g1513 692 MobiDBLite consensus disorder prediction 466 557 - -
Vvi7g1513 692 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Vvi7g1513 692 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 690 - -
Vvi7g1513 692 MobiDBLite consensus disorder prediction 512 557 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1513 316 431 Homeobox Transcription Factor Family AT1G28420 31.915 1.66e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vvi7g1513 WAC_Acf1_DNA_bd 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1513 - - vvi:100266296 1355.12