LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g1504	ATGGTCCAAAGAAAGGTAGGCAACAAGCTTGGAATCCAAGCTGATCATGTTAGTAAGACCGAGAAGCGTTTGGGGAACCTCAAACCGGGGTTTTCCCAGCACCAGGATGGCAGAAACAGGGCTGCTGACATGAAGAAGAAAATGAAGAAATCAAGATCAATCAAGCTTTCAGATATTGAGAGCTTAAGATCATCACCTCTGCAGCCTGGCAAGCCGCCTCCTCTCAGTGCCCAACCAGCTGCAGCAAAGCAATCTGTGATCAGGCCACCTGATGGGTCGCCAAATTATATGAAGTCCACCAGCTGTTCTGATGCAAGGAAGGAGAGTTCCCAGGTGAGTCCCCGGAGTCCTCAAACTGGTTCTGGCAGTGGGCGGAGGCTTTCAAGTAATTCAAAAGTTTGCTCCGCTTCCACCCATAGAACTGCAAGAACATCAAGTTTGAAACTGGTGAAGACCTTAACAAAGAGTCCTAGCTTTAAACCGGTGAGAGCTTCTACCAAGAAGTGCTCCAAGGTTGCTCTGTGTGCAGATATGGATGCACATGGAGCTACGTGTTCTTCAACCCTGAAAGATTCCAACTTTCCTGAATATCTCATGCTCAATCCTGGGGGAACTGAATATGAAGGAACTTCAGTTATCAAGGTTTGCCCTTATACTTACTGTTCTCTCAACGGTCATCACCATGCTCCTTTGCCTCCATTGAAGTGCTTCTTGTCAGCAAGGCGACGTGTGCTGAAGACCCAGAAGACTATGAAATTGGAAGCTCTATCCCCGCGAAGAGCTAAGCTGCCTGGTGATGGCATGAAATCAATTGATACTGCGCAGGTGATCATTGATGGGAAACCTGCTATTCAAGAAGTTGATTCAGGTAGCTCAGCAGTGTCCCCTCTCATACAAGAAGTTGGCATGGATTTTTTCATTGAAATCTATGCTAAAAATAGAGATGACTCTGCTGAAGCAATTGGAAGCAACATACCTGATCAGGATGATGAGGAGATAGTTGATGTTGCTGGGGAAACTGGACATCTCAATGACATCATGCCTTCAGTTGAAGGTGGCGATGAAACAACAAAAGATGATGGGCAAGTTGCAGACAGCGAATCAGATGAACCACCAGTCTCTGAGATTGATTCTGGGGACAATCTGGATCAGAACAGTGATATCGTTTTCGCTGAAACCTCTTCTGAACGAGACCAGAGGGCAGAGGAAGCAGATGAAGACTATCCACCTTCCTTGGTTCCAGGAGAAATCACTCCTGGATACAGCAGTGATGGATGGGAATCAAAATCTGAAGCTACTGATATGGACTGGGAAGAGGGGCGATTTTCGGCCCAACATCCTCATAATTCAACTCAAGGCAACGATGAGTCTAATTTGGGAAGCGGTTACCTGCCGGAGATCAAGCATCCTGATTTGCATGATGAACCCATCTCCAAGCCAGATGATATTATCAGCAAGTGCTTTGAGGAGATTTTTTCTGAAGTAAAGCAAGAGGTCATTGAAGATGAAAGTTCATGCTTTGAAGTGCAATTCAGCGACAGTGATTCAGATTCAGATAGCATAGACCAGAATTTGGAGAATGATGAATCTAGCCAAATGTCCGAGAGCCCAAATGAAGAGCAAATTTCTTCAATTTTCAAGGAAGTAGCAACTCATGAAGAAGAAGATGGAAAGGCCGGGATATATGATTTCTTCAGCATTCAAGTTGATTCATCTCCAGTTGAAGAGGCAATTGACGAACCAGTGGCAGCCAATAATGAGAAGAGTGGAGTTTCTGAAGCAGGGTCTTTAATCCTGGAGATGAATCCCCAACTTGGGGATGTTGAAGCCACTGGTGACATTGAAATTGCGGATAAACCTATGATTGATCAACAGGAGAGTGGATTTCTTCAAGATGATGATGCAAATGTGCAGCTCAAGAACCAAGACTCTGATTCGTCTCAAGATTTGAACATTACAGATCAGGATGAAACAAATGAAGATTTCAATGGAGGTGATAAGGCCAGTGAAGACCACCAGTTTGATTCCATCACTGAAGGAAGAAGGCTGAGTGAAGAGGCATTCAATGAAACCGTCCTTCTGAAGACTGAGTATTTAGAAACAAATCAGAATGCTGCCACAAGAGATTTTGTCCTGGAGCAGGAACTCATCAATGGTGGTGATGAAGGAGGAAAGGAAGAGAAAGAACAAGCGGATAGCGTTGCTGATAACTGTAAATCAAGTCGAGCATTTTCTGATGAAAGCCTTCTTGCAGAAACTCAGGATCACCCATGTGACAACAATGTTGAAGACAAGATTGACTCTGAGGAGGATAAAGCTCAAGCTGGGAAGTTCAAGATCACAAGTTCCATGGATTTGGAGGAACACAGTGATTCAAAAATGAAGAAATCTGCTTTAGCTGAAAACAGTGATGGAGAAGTTGATAACATGGAAGTGGAAGATAGAACCGAACCAGAAGCAGCAGATACACGCCTCAGTTCCAACAATAGAACCAACTCAGAAGTCAGAACTACATTCTTCCCTGCACGACGCAACACCAACCAAGAACTAGTCACAACCTCCAATAAGCCAAAAGGAGCAATCAGACGCAGGAGACCTGTCAAGGACAATGAAGAACCAAGAAGCTTCAATCCACGTGAACCAAATTACTTGCCACTAGAGCCTGACCCAGAAGCAGAGAAGGTTGATCTCAGGCATCAAATGATGGATGAAAGGAAAAACTCAGAGGAATGGATGCTTGATTTTGCACTCCGCAAGACTGTCACAGAACTTGCTCCAGCTAGGAAGAGGAAAGTGGCACTGCTTGTTGAAGCTTTTGAAACAGTACTCCCATTGCCCAAATATGAAACCCGTATCAGGCATACTTCAGCAGCTTTTGCTCACCCAAGACCCATTCAAGCCTGCAGCTGA	2910	0.4471	MVQRKVGNKLGIQADHVSKTEKRLGNLKPGFSQHQDGRNRAADMKKKMKKSRSIKLSDIESLRSSPLQPGKPPPLSAQPAAAKQSVIRPPDGSPNYMKSTSCSDARKESSQVSPRSPQTGSGSGRRLSSNSKVCSASTHRTARTSSLKLVKTLTKSPSFKPVRASTKKCSKVALCADMDAHGATCSSTLKDSNFPEYLMLNPGGTEYEGTSVIKVCPYTYCSLNGHHHAPLPPLKCFLSARRRVLKTQKTMKLEALSPRRAKLPGDGMKSIDTAQVIIDGKPAIQEVDSGSSAVSPLIQEVGMDFFIEIYAKNRDDSAEAIGSNIPDQDDEEIVDVAGETGHLNDIMPSVEGGDETTKDDGQVADSESDEPPVSEIDSGDNLDQNSDIVFAETSSERDQRAEEADEDYPPSLVPGEITPGYSSDGWESKSEATDMDWEEGRFSAQHPHNSTQGNDESNLGSGYLPEIKHPDLHDEPISKPDDIISKCFEEIFSEVKQEVIEDESSCFEVQFSDSDSDSDSIDQNLENDESSQMSESPNEEQISSIFKEVATHEEEDGKAGIYDFFSIQVDSSPVEEAIDEPVAANNEKSGVSEAGSLILEMNPQLGDVEATGDIEIADKPMIDQQESGFLQDDDANVQLKNQDSDSSQDLNITDQDETNEDFNGGDKASEDHQFDSITEGRRLSEEAFNETVLLKTEYLETNQNAATRDFVLEQELINGGDEGGKEEKEQADSVADNCKSSRAFSDESLLAETQDHPCDNNVEDKIDSEEDKAQAGKFKITSSMDLEEHSDSKMKKSALAENSDGEVDNMEVEDRTEPEAADTRLSSNNRTNSEVRTTFFPARRNTNQELVTTSNKPKGAIRRRRPVKDNEEPRSFNPREPNYLPLEPDPEAEKVDLRHQMMDERKNSEEWMLDFALRKTVTELAPARKRKVALLVEAFETVLPLPKYETRIRHTSAAFAHPRPIQACS*	970

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	629	653	-	-
	Vvi7g1504	969	PANTHER	CALMODULIN-BINDING PROTEIN-RELATED	1	944	IPR044681	GO:0005516
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	525	545	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	757	802	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	1	140	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	660	682	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	94	140	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	341	478	-	-
	Vvi7g1504	969	SMART	CaM_binding_2	828	944	IPR012417	GO:0005516
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	429	443	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	822	855	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	719	735	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	393	407	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	506	554	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	717	889	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	378	392	-	-
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	444	459	-	-
	Vvi7g1504	969	Pfam	Plant calmodulin-binding domain	843	944	IPR012417	GO:0005516
	Vvi7g1504	969	MobiDBLite	consensus disorder prediction	609	682	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g1504	Vvi-Chr7	19762668	19765577	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g1504	861	969	Calmodulin-binding Proteins	AT2G38800	55.963	7.62e-32	130

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g1504	-		-	vvi:100247519	1882.84