Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1501 ATGGCAACTACGGTGCCGATCGCCTATCAGGGCAATACGTCGGCATCAGTGCCGGACTGGTTGAACAAGGGCGACAACGCATGGCAGATGATATCGGCCACCCTTGTGGGCTTGCAGGGCATTCCGGGGCTGATGATACTGTACGGTGGGTTGGTGAAGAAGAAGTGGGCGGTGAACTCGGCCTTCATGACTTTCTACGGCTTCGCCGCGGTGATCCTCTGCTGGGTGAGCTGGGCCTATAGGATGTCCTTCGGCGACCAGCTCCTCCCCTTCTGGGGCAAGGCTGGGGCGGCGCTGGGGCAAAAGTTCCTGCTAAAGCAAGCGGCGCTGCCGGCGACAACGCATCACTATAAGAATGGCACGGTGGAAACAGCGATGATCACGCCATTTTATCCGATGGCGTCGATGGTATGGTTCCAGGGCGTGTTCGCGGCGGTGGCGGTGATTCTGTTGGCGGGGGCGGTGCTGGGGAGGATGAATATAAGGGCGTGGATGGTGTTTGTGCCGCTGTGGCTGACATTTTCCTACACTGTTGGGGCTTTCAGCTTGTGGGGTGGTGGCTTCTTGTTTCATTGGGGTGTCATGGACTACTCTGGTGGTTATGTCATTCATGTCTCATCTGGGATTGCTGGCTTCACTGCTGCTTACTGGGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGTTCAACGGAGGAGACCCTTACGCAGCTAACACCGACTCCTCCATGGCAGTTCTCAACACCAACATCTGTGCCGCCACCAGCCTCCTCGTCTGGACCTGGCTTGATGTTATCTTCTTCAAGAAGCCTTCTGTCATTGGTGCTGTTCAGGGCATGATCACCGGCCTTGTCTGCATCACCCCTGCTGCAGGACTCGTTCAAGGATGGGCGGCCATATTAATGGGGATCCTCTCCGGCAGCGTTCCATGGTTCACCATGATGATCCTCCACAAGCGCTCCACTCTCCTCCAGCACGTCGACGACACTCTCGGAGTCCTCCACACCCACGCTATCGCCGGCTACCTCGGCGGCATCCTCACAGGATTCTTCGCCGAGCCTGAGCTCTGCAGCCTCTTCCTCCCCGTCACCAATTCCCGCGGCGCTGTCTACGGCGGCTCCGGCGGCATTCAGATCCTCAAGCAGATCGCCGGCGGCGCCTTCATCATCGCGTGGAACGTAGTGATGACTTCCATAATATGTATAGTGGTGAAGTTAGTGGTTCCGCTGAGGATGCCGGAGGAGGAGCTGCTGATCGGCGACGACGCCGTGCACGGGGAGGAAGCGTACGCCCTTTGGGGAGACGGAGAGAAGTATGATTCCTCGAAGCATGGGTTTTATTCTGATGATACTCAGCACCAGAGGCCTTACAGTGGAGCCACTGACGCGGTTTAG 1458 0.5782 MATTVPIAYQGNTSASVPDWLNKGDNAWQMISATLVGLQGIPGLMILYGGLVKKKWAVNSAFMTFYGFAAVILCWVSWAYRMSFGDQLLPFWGKAGAALGQKFLLKQAALPATTHHYKNGTVETAMITPFYPMASMVWFQGVFAAVAVILLAGAVLGRMNIRAWMVFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHVSSGIAGFTAAYWVGPRSKRDRERFPPNNVLLMLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQGWAAILMGILSGSVPWFTMMILHKRSTLLQHVDDTLGVLHTHAIAGYLGGILTGFFAEPELCSLFLPVTNSRGAVYGGSGGIQILKQIAGGAFIIAWNVVMTSIICIVVKLVVPLRMPEEELLIGDDAVHGEEAYALWGDGEKYDSSKHGFYSDDTQHQRPYSGATDAV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1501 485 FunFam Ammonium transporter 8 454 - -
Vvi7g1501 485 MobiDBLite consensus disorder prediction 465 485 - -
Vvi7g1501 485 NCBIfam ammonium transporter 25 451 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi7g1501 485 SUPERFAMILY Ammonium transporter 20 433 - -
Vvi7g1501 485 ProSitePatterns Ammonium transporters signature. 196 221 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vvi7g1501 485 PANTHER AMMONIUM TRANSPORTER MEP2 12 463 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi7g1501 485 Gene3D Ammonium transporter AmtB like domains 3 454 IPR029020 -
Vvi7g1501 485 Pfam Ammonium Transporter Family 27 451 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1501 Vvi-Chr7 19728662 19730803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1501 133 477 Inorganic Solute Cotransporters AT2G38290 69.942 2.43e-174 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1501 K03320 - vvi:100259492 970.304