Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1495 ATGTTAAGATTCAGTTATTCATCTAATGGCCCTGATGTTGAGGGTGAAGCACTGGTTGATTTTCTGAAGACTCTAAATGATTCGAATAACAGAATTACAGATTGGAATGATCATTTTGTAAGCCCATGCTTCAGTTGGTCTAATGTAACTTGCAGGAATGGAAATGTCATATCGTTGAGCCTGGCTTCCAAGGGATTTTCAGGAACTCTTTCACCTTCAATTACCAAACTGAAGTTTTTGGCTAGCTTGGATTTAAAGGATAACAATCTGTCGGGTGCATTGCCTGATTATCTGAGCAGCATGATAAACCTACAAAATCTGGATCTTGCGCGTAACAACTTCAGTGGCTCTATTCCTTCTAGTTGGGGTCAATTGTCAAACATAAAGCATTTGGACCTTTCATCCAATGACTTAACTGGAAGAATTCCAGAGCAACTATTTTCAGTTCCAACATTCAATTTCACAGGAAACCGTCTTACTTGTGGCTCCAGCTTGCAGCAACCATGTGCTTCAGGCTCCACCATTCCAGTTTCAACCAAAAAATCAAAACTCAGGGTGGTTACTCCTGTGGCAATTTGTGCTGCATTTATACTTCTATCCCTTGGAGCCATATTTGCTTACCGATACTGTTACGCACATAAAATCAAGCGTGATGTGTTTCATGATGTTACTGGTGAAGATGAATGCAAAATTTCATTTGGCCAAGTGAGAAGATTTTCATGGCATGAACTGCAGCTTGCCACTGATGAGTTTAGTGAGAGCAACATAATTGGACAGGGAGGCTTTGGTAAAGTTTATAGAGGTGTTCTCCCAAATGGCACAAAGGTTGCTGTGAAACGCCTCTCAGATTATCACAATCCTGGAGGAGAGGCTGCATTCCAGAGGGAAGTTCAATTGATTAGTGTAGCAGTTCATAAGAATCTTCTTCGGTTGATTGGATTTTGCACAACCTTCAATGAGAGAATTCTTGTTTATCCATTCATGCAAAATCTCAGTGTTGCATACCGCTTGAGAGATTTAAAACCTGGGGAGAGAGGCTTGGACTGGCCAACAAGAAGAAAAGTGGCTTTTGGTGCAGCCCATGGCTTGGAGTACCTACATGAGCATTGCAATCCCAAGATTATACATCGGGATTTAAAGGCTGCAAACATTCTTCTGGATGATGATTTTGAACCCGTTCTTGGAGACTTTGGATTAGCAAAACTGCTTGATACAAAACTGACTCATGTGACAACTCAGGTGCGTGGGACCATGGGACACATTGCCCCAGAATATCTGTCCACAGGAAAATCCTCAGAAAAGACGGATGTCTTTGGTTATGGTATAACCCTTCTCGAACTTGTAACTGGTCAGCGCGCAATAGATTTTTCTCGGCTTGAAGAGGAGGAGGATGTTCTATTGCTTGATCATATCAGGAAGCTTCAAAGGGAGAAAAGGCTGGACGCAATTGTGGACAGGAACTTGAAGACTTTTGATGCCAAAGAAGTCGAGACCATTGTTCAGGTGGCACTGCTCTGCACCCAGAGCTCACCTGAGGACCGTCCAAAGATGGCTGAAGTGGTAAGCATGCTGCAAGGAGAGGGTTTGGCAGCGAGATGGGTCGAATGGGAGCGGCTTGAAGAGGTAAGGAATCAACACTTCTCGCTCCTGTCTCACCAATTTCCTTGGGCAGATGAGTCCACCCACGACCAAGAAGCCATACAGTTGTCTAAAGCAAGATAA 1722 0.4338 MLRFSYSSNGPDVEGEALVDFLKTLNDSNNRITDWNDHFVSPCFSWSNVTCRNGNVISLSLASKGFSGTLSPSITKLKFLASLDLKDNNLSGALPDYLSSMINLQNLDLARNNFSGSIPSSWGQLSNIKHLDLSSNDLTGRIPEQLFSVPTFNFTGNRLTCGSSLQQPCASGSTIPVSTKKSKLRVVTPVAICAAFILLSLGAIFAYRYCYAHKIKRDVFHDVTGEDECKISFGQVRRFSWHELQLATDEFSESNIIGQGGFGKVYRGVLPNGTKVAVKRLSDYHNPGGEAAFQREVQLISVAVHKNLLRLIGFCTTFNERILVYPFMQNLSVAYRLRDLKPGERGLDWPTRRKVAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEPVLGDFGLAKLLDTKLTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIRKLQREKRLDAIVDRNLKTFDAKEVETIVQVALLCTQSSPEDRPKMAEVVSMLQGEGLAARWVEWERLEEVRNQHFSLLSHQFPWADESTHDQEAIQLSKAR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1495 573 SMART serkin_6 251 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1495 573 Pfam Protein kinase domain 252 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1495 573 Pfam Leucine rich repeat 80 138 IPR001611 GO:0005515
Vvi7g1495 573 SUPERFAMILY L domain-like 15 162 - -
Vvi7g1495 573 ProSitePatterns Protein kinases ATP-binding region signature. 257 279 IPR017441 GO:0005524
Vvi7g1495 573 FunFam Somatic embryogenesis receptor-like kinase 1 328 544 - -
Vvi7g1495 573 Pfam Leucine rich repeat N-terminal domain 13 51 IPR013210 -
Vvi7g1495 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Vvi7g1495 573 ProSiteProfiles Protein kinase domain profile. 251 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1495 573 FunFam Somatic embryogenesis receptor kinase 1 220 327 - -
Vvi7g1495 573 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 12 171 - -
Vvi7g1495 573 Gene3D Transferase(Phosphotransferase) domain 1 328 544 - -
Vvi7g1495 573 Gene3D Ribonuclease Inhibitor 11 171 IPR032675 -
Vvi7g1495 573 SUPERFAMILY Protein kinase-like (PK-like) 231 524 IPR011009 -
Vvi7g1495 573 Gene3D Phosphorylase Kinase; domain 1 220 327 - -
Vvi7g1495 573 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1495 Vvi-Chr7 19598669 19612376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1495 11 573 Receptor kinase-like Gene Family AT5G10290 56.345 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi7g1495 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1495 - - vvi:100250696 1133.63