Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1471 ATGGGCGACGGAACCACCGCCACGAGCAACAGAGGAGGGGGCGGCAATGGCGGCAGCGGCAGCAACAAGCCAGCGTGGTTGCAGCAGTACGATCTGATAGGGAAAATAGGGGAGGGGACATACGGGCTGGTGTTCCTGGCTAGGACCAAGTCCCCTTCCAACAGGGGCAAGTCCATTGCCATCAAGAAATTCAAACAGTCTAAGGATGGCGATGGCGTCTCTCCCACCGCCATACGCGAAATCATGCTGCTTCGTGAAATTTCCCATGAGAATGTTGTGAAGCTTGTGAATGTGCATATCAATCATGCAGACATGTCACTCTATCTGGCTTTCGACTATGCGGAGCATGACCTTTATGAAATCATTAGACACCATAGAGACAAGGTGACCAATCCTATCCATCCATACACTGTTAAGTCATTGCTTTGGCAGCTGCTTAATGGGCTCAACTATCTCCACAGTAATTGGATCATTCATCGAGATCTAAAGCCATCAAATATCTTGGTTATGGGTGAGGGAGATGAACAGGGAGTGGTTAAAATTGCTGATTTTGGGCTTGCAAGAATATACCAAGCACCCCTGAAGCCACTATCTGATAATGGGGTGGTGGTGACCATTTGGTATCGTGCCCCTGAGTTACTACTTGGGGCAAAGCACTACACTAGCGCTGTTGATATGTGGGCTGTTGGATGCATATTTGCTGAGCTTCTGACTTTGAAGCCATTATTTCAAGGGGCAGAAGTCAAAGCGACACCAAATCCTTTTCAACTTGATCAACTTGATAAAATATTCAGGGTGTTAGGTCATCCCACACAAGAAAAGTGGCCAACACTTGTGAATCTTCCTCATTGGCAATCAGATGTACAACATATTCAGGGGCATAAATATGAGAATCCTGGGCTTTATAGTGTTGTTCATCTCCCTCTGAAGAGTGCTGCATATGATCTCCTCTCAAAAATGCTCGAATATGATCCTCGAAAGCGAATAACGGCAGCACAAGCTCTAGACCACGAGTACTTTCGTAGTGAACCTTTACCAGGGAGGAATGCACTGGTACCTAGCCAAGCAGGAGCGGAGAAAGTCATGAATTATCCTACTCGTCCAGTGGACACAACTACAGATTTTGAAGGAACAAATAGCCTTCAGACTTCTCAACCGGTATCATCGGGAAATGCAGTTTCTGGGAGCATGGCAGCTGGTCATGTGGTGCCCAATCGGTCTGTTCCTCGGCCAATGCCTGTGGTTGGGATGCAAAGAATACAAGCTCAAGGCATGTCAGCCTATAATCTCACATCCCAGGCTGCAATGGGAGGTGGAATGAATCCTGGAAGTATCCCTATGCAGCGGGGTGTTGCTGCCCAGGCCCATCAGCAACAGATGAGAAGAAAAGACCCTGGAATGGGGATGCCTGGCTACCCTCCGCAACAAAAATCAAGACGTTTCTGA 1446 0.4786 MGDGTTATSNRGGGGNGGSGSNKPAWLQQYDLIGKIGEGTYGLVFLARTKSPSNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVTNPIHPYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGDEQGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFRVLGHPTQEKWPTLVNLPHWQSDVQHIQGHKYENPGLYSVVHLPLKSAAYDLLSKMLEYDPRKRITAAQALDHEYFRSEPLPGRNALVPSQAGAEKVMNYPTRPVDTTTDFEGTNSLQTSQPVSSGNAVSGSMAAGHVVPNRSVPRPMPVVGMQRIQAQGMSAYNLTSQAAMGGGMNPGSIPMQRGVAAQAHQQQMRRKDPGMGMPGYPPQQKSRRF* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1471 481 ProSitePatterns Protein kinases ATP-binding region signature. 36 63 IPR017441 GO:0005524
Vvi7g1471 481 MobiDBLite consensus disorder prediction 376 395 - -
Vvi7g1471 481 Gene3D Phosphorylase Kinase; domain 1 21 113 - -
Vvi7g1471 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vvi7g1471 481 Gene3D Transferase(Phosphotransferase) domain 1 114 355 - -
Vvi7g1471 481 FunFam Putative cyclin-dependent kinase E-1 114 353 - -
Vvi7g1471 481 PANTHER CELL DIVISION PROTEIN KINASE 28 346 - -
Vvi7g1471 481 Pfam Protein kinase domain 30 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1471 481 CDD STKc_CDK8_like 29 340 - -
Vvi7g1471 481 SMART serkin_6 30 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1471 481 MobiDBLite consensus disorder prediction 452 481 - -
Vvi7g1471 481 FunFam Cyclin-dependent kinase e-1 18 113 - -
Vvi7g1471 481 MobiDBLite consensus disorder prediction 1 22 - -
Vvi7g1471 481 MobiDBLite consensus disorder prediction 376 397 - -
Vvi7g1471 481 ProSiteProfiles Protein kinase domain profile. 30 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1471 481 SUPERFAMILY Protein kinase-like (PK-like) 26 345 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1471 Vvi-Chr7 19079908 19094394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1471 23 481 Core Cell Cycle Gene Families AT5G63610 77.489 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Vvi7g1471 Pkinase 8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1471 K02208 - vvi:100249168 943.725