Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1466 ATGGGTAATGAAAATCACCTACAGCCAATTAATGTTGGAAAAAGCCATGAAGGTCACCCCTATATTGAAAATGAGGAATCGGGGGTGTGCTCTACACGTCACAGTATAGATAAAGAAGCAGGCTTGGCAACCTGTCGGGTATGCCAATGTGCTGAATCTGACAGAAGGGGAGAGGCTGCATTGGGATTTTTGGGTATCACTCCTCCAGTACAAGAAGCTCGAAAAAGTGATGAACTCATCAAGACTAATAGCAAGGAAGTCCTGAAAGAAGCTGAAGATTATGCTTCCCCTACCAAAAATGGTAGAAGAGAATCTGATTTTGTTGAGTTTGTAAGCCCTCAAGGGGAAGTTTTCATTTGTAATACTGATATAGAAATGGGTTCATGCCATCATCAAGATACATTAATTGAGCTTGGTTGTTCTTGCAAAAATGATCTTGCCCTAGTTCACTATGCCTGTGCACTCAAATGGTTTGTTAACCATGGATCTACTATTTGTGAAATCTGTGGATGCATTGCAAAAAATGTCAGAACTTCTGACTTCAAAAAAGTTGTTGGTTCTTTGAAGGAGTATGAAGCTTTAAGGGAAAGGACTGCTAGCGGGGAACCTGTTGTCCAGGTGCGGACAAATTTAGGTGTAGATCCTGATGCTGTTGCAGCAATTCAAAGGCAAAGGCTAAGTGAGATATCACTGTGGTTTAATCCACATAACAATAACAATAACAATAACAATTCTGCTGTAGCTTCACAGGTTGTCTCGGAACAACATTTGAATATTGTCGCAGAAGATTTTGTTCCTGCTGAAAATCCTGCAACCAAATGGGCTGTGGAAGGTACCGGAATTCTGCTTGCTACAGGGCTACTTACTGTTACTCTTGCATGGCTCATTGCTCCTCGTGTTGGAAAGAAAACTGCAAAAAGTGGTCTTCATATTCTTCTTGGAGGCATTTGTGCTTTAACAGTTGTGGTCTTCTTTCGCTTTATTGTGCTAACCAGAATCAAGTATGGGCCTGCTCGGTACTGGGCTATCTTGTTTGTCTTCTGGTTTCTTGTGTTTGGTATATGGGCTTCACGAACACATGGTGCTCATACTACATGA 1098 0.4153 MGNENHLQPINVGKSHEGHPYIENEESGVCSTRHSIDKEAGLATCRVCQCAESDRRGEAALGFLGITPPVQEARKSDELIKTNSKEVLKEAEDYASPTKNGRRESDFVEFVSPQGEVFICNTDIEMGSCHHQDTLIELGCSCKNDLALVHYACALKWFVNHGSTICEICGCIAKNVRTSDFKKVVGSLKEYEALRERTASGEPVVQVRTNLGVDPDAVAAIQRQRLSEISLWFNPHNNNNNNNNSAVASQVVSEQHLNIVAEDFVPAENPATKWAVEGTGILLATGLLTVTLAWLIAPRVGKKTAKSGLHILLGGICALTVVVFFRFIVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1466 365 MobiDBLite consensus disorder prediction 1 20 - -
Vvi7g1466 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 179 IPR013083 -
Vvi7g1466 365 SUPERFAMILY RING/U-box 134 172 - -
Vvi7g1466 365 SMART ringv_2 129 170 IPR011016 GO:0008270
Vvi7g1466 365 PANTHER ZINC FINGER, RING-CH-TYPE 25 332 - -
Vvi7g1466 365 ProSiteProfiles Zinc finger RING-CH-type profile. 109 176 IPR011016 GO:0008270
Vvi7g1466 365 Pfam RING-variant domain 133 169 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1466 Vvi-Chr7 18989194 18996826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1466 1 355 C3H Transcription Factor Family AT5G08750 65.574 2.06e-165 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1466 - - vvi:100243998 723.776