Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1463 ATGATGAGCGGAGATCAGTTGCAGTTGCCGGCTGGTTTCAGATTTCATCCGACGGACGAGGAGCTCGTGGTGCATTATCTGGTTCGTAAATGCGCATCACAGAGCATCTCCGTTCCGATTATTGCCGAGGTTGATCTCTACAAGTACGATCCATGGCAGCTTCCAGGAATGGCTCTGTACGGTGAAAAGGAGTGGTACTTCTTCTCTCCAAGGGACCGCAAATATCCCAACGGTTCAAGGCCTAACCGGGCGGCCGGATCCGGCTACTGGAAGGCCACCGGCGCCGATAAGCCCATCGGCCGACCCAAGACGGTCGGAATTAAAAAGGCACTCGTATTTTATGCCGGCAAAGCTCCCAGAGGTGTCAAAACCAATTGGATCATGCACGAGTATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAACAACTTAAGGCTTGACGATTGGGTCTTATGTCGAATATACAACAAGAAAGGCAGCGCCGAGAAACAGCACACCTTTGATCAAAAGTCAATGAAATATCCAGAACTTGAAGACCAGAAGCCAAAAATAATATCAACGGTTCAAAATAAAGTAGTACCCTCTTCATTGCCGTCCCTACCTCCAATGCCTGCGCCGCCAACAACCAATGACTACCTATACTTCGAGACATCTGATTCAGTGCCGAGGTTACACACTCACACAGATTCTAGTGGATCCGAACAAGTAATGTCACCGGAGAAGGAGGTTCAAAGCGAGCCTAAGTGGAATGACTTTGATTTTAGCCTCTATATGGATGGTTTTGCCAACGACCCTTTTGCCTCTCAAGCACAGTTTTCGGGAGACTTATTAACATCGTCGTGGCAGGACATGTTGATGTTCTCGAACAAGTCATTTTGA 885 0.4847 MMSGDQLQLPAGFRFHPTDEELVVHYLVRKCASQSISVPIIAEVDLYKYDPWQLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGRPKTVGIKKALVFYAGKAPRGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGSAEKQHTFDQKSMKYPELEDQKPKIISTVQNKVVPSSLPSLPPMPAPPTTNDYLYFETSDSVPRLHTHTDSSGSEQVMSPEKEVQSEPKWNDFDFSLYMDGFANDPFASQAQFSGDLLTSSWQDMLMFSNKSF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1463 294 Pfam No apical meristem (NAM) protein 10 133 IPR003441 GO:0003677|GO:0006355
Vvi7g1463 294 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Vvi7g1463 294 MobiDBLite consensus disorder prediction 226 242 - -
Vvi7g1463 294 MobiDBLite consensus disorder prediction 225 247 - -
Vvi7g1463 294 FunFam NAC transcription factor 18 163 - -
Vvi7g1463 294 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Vvi7g1463 294 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Vvi7g1463 294 PANTHER NAC TRANSCRIPTION FACTOR 56 8 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1463 Vvi-Chr7 18930552 18931987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1463 7 294 NAC Transcription Factor Family AT1G01720 63.158 6.49e-125 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi7g1463 NAM 1.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1463 - - vvi:100261123 592.423