Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1433 ATGGAATGGTCAGATTTTCTTGAATCTTCCTTCTGCACTAATCTGCAGGCTCTTCAAACACCCCATCCTGGATGGGATTATGAAGAGAACAAGATGTTTGAGACTGCTTTGGCCCAACTTGGCTTTGCTACTCCAGACTTACTGCAGAAAGTGGCTGCTAGGGTTCCTGGGAAAAGCTTTGAACAGGTTGTCAGCCATTTTGCAGCACTGGTTCAAGATATAGAAATGATTGAGTCTGCAGGTGACTTCCCCATGTCTATGCCAGAACTGGGTACTAAGAAAGAACAAGGATCATCTGCTAGAGCCATGTCCACTGGCCATACATCCCGAAGGGGGGTTCCATGGACTGTACAAGAACATAAGTTGTTCCTGGTTGGACTGATAGCATTTGGGAAAGGAGACTGGAGGAACATATTGAGGCACTGTGTGATAACCAAGAGCCCAACCCAGGTGGCCAGCCATGCTCAGAAGTACTTCAAGCGCCATAGCAGCTCTGCATCATCTTCTGCAAGGAGGAGACGATGCAGCATTCATGATATTCAAATTAATTTTGATGATGATTCCACCTCAACTATCTTGCCTAATATCTCCCAAATCTCAGATGCTTCCAGGCTGCTGCCTGCTTCCTGCAACAATGGGGAGGAGAAGAACCCTATTTCTCCATGA 666 0.4655 MEWSDFLESSFCTNLQALQTPHPGWDYEENKMFETALAQLGFATPDLLQKVAARVPGKSFEQVVSHFAALVQDIEMIESAGDFPMSMPELGTKKEQGSSARAMSTGHTSRRGVPWTVQEHKLFLVGLIAFGKGDWRNILRHCVITKSPTQVASHAQKYFKRHSSSASSSARRRRCSIHDIQINFDDDSTSTILPNISQISDASRLLPASCNNGEEKNPISP* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1433 221 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 161 IPR006447 GO:0003677
Vvi7g1433 221 Gene3D - 24 70 - -
Vvi7g1433 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 163 IPR017930 -
Vvi7g1433 221 SUPERFAMILY Homeodomain-like 109 163 IPR009057 -
Vvi7g1433 221 CDD SANT 114 159 IPR001005 -
Vvi7g1433 221 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 200 IPR043363 -
Vvi7g1433 221 Gene3D - 113 164 - -
Vvi7g1433 221 SMART sant 21 73 IPR001005 -
Vvi7g1433 221 SMART sant 111 161 IPR001005 -
Vvi7g1433 221 Pfam Myb-like DNA-binding domain 114 159 IPR001005 -
Vvi7g1433 221 SUPERFAMILY Homeodomain-like 24 77 IPR009057 -
Vvi7g1433 221 FunFam transcription factor MYB1R1 113 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1433 Vvi-Chr7 18405754 18406523 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi7g1433 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1433 - - vvi:100242224 442.195