Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1429 ATGACTCGTTCTTCAAGATTCCTGAGCAGCTGGAACTCATCGGCAGCGGAACCCCCGGAGGCAGTGGAGGTCGAGTCCGATTTCGTCGTGATCCTTGCGGCGCTGCTATGCGCTCTGATATGCGTGGTGGGTCTCATCGCCGTAGCTCGCTGCGCTTGGCTTCGGCGGGGCTCAGCGGGAGGGGCGCGCGCGTCGGCCACGCAACCGGCGGCGAACAAGGGGCTGAAGAAGAAGATCCTTCAGTCGCTTCCGAAGCTGACCCACGACGCCACAGTGAGCGGCAAGTTCGCGGAGTGCGCCATATGCTTGGCGGAGTTCGTGGAGGGTGACGAGATCCGAGTTCTGCCGCAGTGCGGGCATGGGTTCCATGTGTTGTGCGTGGACACATGGCTGAGCTCCCACTCCTCCTGCCCGTCGTGCCGGCAGATACTGGTCGTCACCAGGTGCCGGCAGTGCGGCAAGTTCCCCGCAATTTCCGGCACGGCAACGTCGGACGCGGAACTCAAGGCAAGGGAACAGGGTACTGCTGATAATGGGTTTCTACCATAA 549 0.6211 MTRSSRFLSSWNSSAAEPPEAVEVESDFVVILAALLCALICVVGLIAVARCAWLRRGSAGGARASATQPAANKGLKKKILQSLPKLTHDATVSGKFAECAICLAEFVEGDEIRVLPQCGHGFHVLCVDTWLSSHSSCPSCRQILVVTRCRQCGKFPAISGTATSDAELKAREQGTADNGFLP* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1429 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 145 IPR013083 -
Vvi7g1429 182 CDD RING-H2_EL5-like 98 141 - -
Vvi7g1429 182 SMART ring_2 99 140 IPR001841 -
Vvi7g1429 182 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 153 - -
Vvi7g1429 182 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Vvi7g1429 182 Pfam Ring finger domain 98 141 IPR001841 -
Vvi7g1429 182 SUPERFAMILY RING/U-box 98 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1429 Vvi-Chr7 18383556 18384104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1429 12 182 C3H Transcription Factor Family AT1G20823 60.326 1.73e-64 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1429 - - vvi:100260977 348.591