Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1422 ATGATCCGCCATTTCCTTCTCGTTCTATGCGTTTTACTCGTCGCTTCGGGGTCCCTCGGTGAATTTTCGACTTCAGAATCATCGGAGGATCCGGCTCCAAGTCCGCGTAGGGATGATTTCATGTACTCGAGTCGACCCACGAGACGATCTTTGCTGTCTCTTCCCAATAAAAATGACACCGCATTGGTGGCTGCCTTGAACGGTACAATCCATTTAGTGGAGAGTAATTCCATGAAAGTGCTCTGGTCATTTACATCAGGACCTTCAATCTACTCTTCATATCAGGCTCCTCTTGACCAAGATAACGCAACTGATTGGGGTTCTGGTTTTTTTGTGGACTGTGGAGAGGACTGGGAGTTGTATATGCACGGCCGGCACTTTGGTAAAGTGAAACTTCCAATGACTGCTGAAGAATTCATCAGCAGCACACCGCATGTGTCTGAGGATGGAGGAGTTATACTTGGGTCCAAGCAAACTACTGTGTTTCTGCTTAATGCTAAGACTGGAAAACTAATACATTCTTATAGGTCATTGGAGTCTCCACCCACGCCACTGAGCAACAAAGAGGAGAGTGTTGTGCATGATAAAGATATTGAGGAATGGGTAGATTCTGGTTCTACAAACCTGAATATTGTTGAGCCACGTCTTTATATTACAAGAACAGACTATTCATTGCAGTCGTTTGCACAAGGCTCAGACAAAGTTTTATGGAATATGACAGTTGCTGAAATTGGTGCTGCTTTTCTTTGTCAAGGTACTGAGAATCTGTTTAGCAGGCCACCTTTAAATCTGGGATGTGAACTTGGCCCTGAATATAACTGTGATTTTGAAATGCCATTGCCATGTCAATCAAAGGCCGTTGTCTACCGATATCGTGGTCATACTATGTTGGAACCTTTTCCTAGGCATGATAGGCTGCAGGAGGCTCATCAAGAAGATAGGCTGCTTTTGCAACCCAATATCGATAAAACTTTAGACTTTCACCCCCAAGATATGATGCTTCCAGCTGTTGTTCCAAACCATATGCTTCCTTCAGAGCCCAAAGATGAGATATCTTTAAACTTTCAGGATAACAATGACAGTGAAGCTGTGCTCCCCTTATCTCCTCCCAAGATAAAAAACTCGGGGATCTCTGACCAGAATGTGCAAATGCCTTATAATGATGGTTTAAGTATGTTTTCTGGAGGGTCAATCTTGTTTTCTCTCATTGTATTCATTGTCATTCTCTTGGTCTCTGTCATCTACTGCTGTACTCCAGTGGCTGGAGAACAAGGTGAGATGAACAAGCAACCAAATGATTCAGATTCAAACTCTGTACCTTCCAAAAAAAGGAAAATTCGGAAATCGGCAAAGAATAACATCAGTTCAGGAAAAAAGGATGAGCATGTCTTGTCTGAAAATAAGGATGGGTCTGCTCACATTGCCAGTGATAACAGCCCATGGTTGAACCTTAATGGACTTGTTGATGGTGACACAAATGGACGTATTGTTGGTAAATTATTTGTATCGAATATAGTAATTGCTAAGGGAAGTAATGGCACTATTGTCCTTGAGGGAATCCATGAAGGCCGCTCGGTTGCTGTGAAACGCCTTGTCCGGGCTCACCATGATGTGGCTTTTAAAGAAATTCAAAATCTTATTGCATCTGACCGGCATCCAAATATTGTTCGATGGTATGGAGTGGAGTATGATCAAGATTTTGTGTATCTATCACTGGAACGTTGTACATGCAGCTTAAATGATTTGCTTCAGATTCACTCGAATTCCTCCCAAAACCCAGGGTTCTCCATGGACCAAGCTACAAAAGCTATGATGGAGTATAGAATCCAGTTGGATTCAGTGAAATGTATTGTGCAGGATATCAAATTGTGGAAATCAAATGGCTATCCTTCATCTGTATTATTAAGCTTAATGAGGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGTGCAAAGCTTTCTGATATGGGTATTAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTGCATCACTGGTGGAAGACATCCATTTGGCGACCCTCTTGAACGTGATGTCAATATTGTTAAGAACAAACCGGACCTCTTCTTAGTGGAGTTTATTCCAGAAGCTTTGGATCTTTTTGCTCGTCTGTTAGACCCCAAGCCTGAATTGAGGCCAAAGGCCTCGGAGGTCTTGTACCATCCTCTGTTTTGGAGCTCCGAGCTGCGGTTGTCATTTCTTCGTGATGCAAGTGACAGGGTAGAATTGGAAGATAGGGAGAGTAATTCCCATGTCTTGAAGGCATTAGAAGGTACTGCACCAACGGCATTGGGTGGGAAATGGAATGAAAAAATGGAACCTGCATTCCTTGCTGATATTGGACGTTACAGGCGATATAAGTTTGATAGTGTTCGGGATTTATTGCGAGTGATACGGAACAAGTGGAATCATTACAGAGAGCTTCCCAGAGAAATTCAGGAAATCTTGGGATCAGTTCCTGAAGGATTTGACAGCTATTTTTCAAGCCGATTCCCAAGGCTCTTGATTGAGGTGTACAAAGTTGTATCCAGACACTGTAAGGGAGAGGAATGTTTTCAGAAGTATTTCAAAGCAATGTAG 2781 0.4279 MIRHFLLVLCVLLVASGSLGEFSTSESSEDPAPSPRRDDFMYSSRPTRRSLLSLPNKNDTALVAALNGTIHLVESNSMKVLWSFTSGPSIYSSYQAPLDQDNATDWGSGFFVDCGEDWELYMHGRHFGKVKLPMTAEEFISSTPHVSEDGGVILGSKQTTVFLLNAKTGKLIHSYRSLESPPTPLSNKEESVVHDKDIEEWVDSGSTNLNIVEPRLYITRTDYSLQSFAQGSDKVLWNMTVAEIGAAFLCQGTENLFSRPPLNLGCELGPEYNCDFEMPLPCQSKAVVYRYRGHTMLEPFPRHDRLQEAHQEDRLLLQPNIDKTLDFHPQDMMLPAVVPNHMLPSEPKDEISLNFQDNNDSEAVLPLSPPKIKNSGISDQNVQMPYNDGLSMFSGGSILFSLIVFIVILLVSVIYCCTPVAGEQGEMNKQPNDSDSNSVPSKKRKIRKSAKNNISSGKKDEHVLSENKDGSAHIASDNSPWLNLNGLVDGDTNGRIVGKLFVSNIVIAKGSNGTIVLEGIHEGRSVAVKRLVRAHHDVAFKEIQNLIASDRHPNIVRWYGVEYDQDFVYLSLERCTCSLNDLLQIHSNSSQNPGFSMDQATKAMMEYRIQLDSVKCIVQDIKLWKSNGYPSSVLLSLMRDVVSGLVHLHDLGIIHRDLKPQNVLIIKEKSLCAKLSDMGISKRLVGDMSSLGHHATGYGSSGWQAPEQLLHGRQTRAVDLFSLGCILFSCITGGRHPFGDPLERDVNIVKNKPDLFLVEFIPEALDLFARLLDPKPELRPKASEVLYHPLFWSSELRLSFLRDASDRVELEDRESNSHVLKALEGTAPTALGGKWNEKMEPAFLADIGRYRRYKFDSVRDLLRVIRNKWNHYRELPREIQEILGSVPEGFDSYFSSRFPRLLIEVYKVVSRHCKGEECFQKYFKAM* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1422 926 ProSiteProfiles KEN domain profile. 794 925 IPR010513 GO:0004540|GO:0006397
Vvi7g1422 926 PANTHER IRE1-RELATED 131 924 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vvi7g1422 926 FunFam Inositol requiring 1-1 45 258 - -
Vvi7g1422 926 Gene3D - 43 258 IPR015943 GO:0005515
Vvi7g1422 926 Pfam Protein kinase domain 507 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1422 926 SMART PGNneu 856 910 - -
Vvi7g1422 926 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 795 926 - -
Vvi7g1422 926 SUPERFAMILY Protein kinase-like (PK-like) 506 805 IPR011009 -
Vvi7g1422 926 MobiDBLite consensus disorder prediction 21 40 - -
Vvi7g1422 926 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 493 573 - -
Vvi7g1422 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Vvi7g1422 926 CDD RNase_Ire1 795 923 - -
Vvi7g1422 926 MobiDBLite consensus disorder prediction 453 468 - -
Vvi7g1422 926 Gene3D KEN domain 798 926 IPR038357 -
Vvi7g1422 926 MobiDBLite consensus disorder prediction 424 472 - -
Vvi7g1422 926 ProSiteProfiles Protein kinase domain profile. 501 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1422 926 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 616 793 - -
Vvi7g1422 926 Gene3D Phosphorylase Kinase; domain 1 489 573 - -
Vvi7g1422 926 SMART ire1_9 209 240 IPR018391 -
Vvi7g1422 926 SMART ire1_9 54 85 IPR018391 -
Vvi7g1422 926 SMART ire1_9 144 176 IPR018391 -
Vvi7g1422 926 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 58 241 IPR011047 -
Vvi7g1422 926 Pfam Ribonuclease 2-5A 797 923 IPR010513 GO:0004540|GO:0006397
Vvi7g1422 926 SMART serkin_6 501 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1422 926 Gene3D Transferase(Phosphotransferase) domain 1 616 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1422 Vvi-Chr7 18320042 18327048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1422 506 790 MAP Kinase Kinase Kinase AT1G09000 27.124 3.17e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vvi7g1422 Pkinase 4.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1422 K08852 - vvi:100249111 1860.11