Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1421 ATGAAGATGGTTTGGTTTCTGCTTTTAATGGTTTTCTTGAATGGGATCATTTCCAATGGGGTTGGTACAAATGTTTCTTCAAGGCCCAGTGTTGTGAACATTGGGGCTATTTTCAGCTTCAATTCTACCATTGGCAAAGTTGCAAAGTTTGCATTAGAAGCTGCAGTCCAAGATGTGAATTCTGATCCGACTGTTCTTGGTGGAACCAAGCTGAAACTTAGGACTCAGGACACAAATTTTAGCGGGTTTGGAGCGATAATGGAAGCTTTACAATTCATGGAGGGTGATACTGTGGCCATAATTGGCCCTCAATCTTCTGTCATGGCTCATGTAGTTTCTCACATTGCAAACGAGCTTCAAGTTCCTCTGATATCATATGCAGCAACAGACCCCACCCTGTTTTCACTTCAGTACCCATTCTTCCTTATGACAACGCATAGTGATCTATATCAGATGGCAGCAATAGCAGACCTTGTTGACTACTATGGATGGAGAGAAGTTATAGCAATTTATGTTGATGATGATTATGGGAGAAATGGGATTGCTGCATTAGGGGATGAACTTACCAAAAAACGTTGTAAGATCTCTTACAAAGCACCTATGTACCCTGAATCAAGCCGAGATGATATCACTGATGTACTGGTAAAGGTGGCTTTAACAGAGTCTCGGATTCTTGTTGTTCACACTTATACCGAATGGGGCCTAGAGGTGCTTGATGTAGCACAATATCTTGGGATGACAGGGAGTGGGTATGTGTGGATTGCTACCAATTGGCTCTCTACCGTCATGGATACCGATGCTTCTCTCCCTTCAAATGCTATGAATAATATCCAAGGAGTTCTCACATTGCGTATGTATACACCTGCTTCGGAACTAAAAAGTAACTTTGTCTCCAGGTGGAGCAACTTGACTAGTGCGGGGACCACGAATCGCCATGTTGGGTTAAGTGCTTATGGTTTATATGCCTATGACACTGTTTGGGTGCTTGCTCATGCAATTAATGCATTTTTCAATCAGGGAGGAAGTATTTCATTTTCAAATGATTCAAGGTTAACCAAGCTAAGGGGAGGGAGTTTACATCTGGATGCTATGAGCATCTTTGATGGGGGGAACCTGTTGCTTCAAAGCATTTTGCAGGTTAATATGACCGGTGTAACAGGCCCAATAAAGTTTAATTCAGACCATTCCCTTATTCGTCCTGCATATGAAGTCATCAATGTGATTGGCACAGGCGTTAGGAGGATTGGTTATTGGTCTAATTATTCTGGCTTATCAGTTGTGCCTCCAGCAATGCTTTATACGAAGCCACCAAATCGTACCAGTACAAATCAACGACTTTATGATGCAATCTGGCCTGGGCAAGCAGCGCAGACACCCCGTGGGTGGGTATTTCCAAGCAATGGAAGGCAATTGATAATTGGCGTACCTGATCGAGTTAGTTACCGTGAATTTATTTCACGAGTAAAAGGAACTGACATGTTCAAAGGGTACTGCATTGATGTATTTACTGCTGCTTTGAGTTTATTGCCATATGCTGTTCCATATAAGTTAGTACCATTCGGGGATGGCATACATAACCCGAGTTGCACAGATCTCGTGCGCTTGATCACAACTGGTGTGTATGATGCTGCAATTGGTGATATTGCAATCGTGACTAATCGAACAAGGATGGTGGATTTTACACAGCCATATATTGAGTCCGGGCTTGTTGTAGTGGCTCCAATTAAGACTTCAAACTCCAATGCTTGGGCTTTTCTGAAGCCATTTAGTAAAAACATGTGGATTGTCACGGGCACTTTTTTCCTACTTGTGGGAGCTGTTGTCTGGATTTTGGAGCATAGGATTAACGATGAATTTCGGGGTCCTCCTAGAAGACAATTTGTCACTATTCTATGGTTCAGCTTCTCAACTCTTTTCTTTGCACATAGAGAAAATACCGTCAGCACCCTTGGCCGTGTAGTGCTAATCATATGGCTATTTGTAGTTCTAATCATCAACTCAAGCTACACTGCAAGCCTTACCTCAATCCTCACAGTGCAACAGCTTTCTTCACCTGTTAAAGGGATAGAAAGTTTACAAACAAGCAACGATCCCATTGGCTACCAACAGGGTTCATTCGCCGTAAATTATTTGAGCGAGGAACTCAACATTCATAAGTCCAGACTTGTTCCTCTTAACTCAGCAGAAGATTATGCTAAAGCCTTAAGAGATGGACCCAAAAAGGGTGGTGTTGCTGCAGTGGTTGATGAGCGTGCATATATAGAACTCTTCCTCTCAACCCGATGCGAATTCACCATTGTAGGTCAAGAGTTTACCAAGAGCGGTTGGGGATTTGCCTTTCCACGTGACTCTCCGTTAGCAGTTGACATGTCTACTGCCATTCTAAAACTGTCCGAGACTGGGGACCTCCAGAGGATCCATGACAAATGGCTGAAAGGTAGTGCTTGCAGATCACAAGATGCAAAACTTGCAGTGGACAGACTCCAGCTTAGGAGCTTCTGGGGCCTCTATGCCATATGTGGGTTAGCTTGCCTTGTTGCCCTTTTCATATATGCCATACTTATGGTGCGGCAATTCAGTAAACACTATATAGAGGAGTCTGACTCGTCTGTGCAAAACTCGCGATCTGGACGCCTCCAGACATTCCTTTCATTTGTTGATGAGAAGGAAGAGGACGTGAAAAGCCGTTCCAAAAGAAGGCAAATGGAAATGGCCTCAACTAGAAGCACTTATGAAGATGAATCTCTGAGCAGTTCCAAGAGAAGGCACATAGAACTATCCTCAAACAAGAGTACTATTACAAGTGATCAAGTCTAA 2817 0.432 MKMVWFLLLMVFLNGIISNGVGTNVSSRPSVVNIGAIFSFNSTIGKVAKFALEAAVQDVNSDPTVLGGTKLKLRTQDTNFSGFGAIMEALQFMEGDTVAIIGPQSSVMAHVVSHIANELQVPLISYAATDPTLFSLQYPFFLMTTHSDLYQMAAIADLVDYYGWREVIAIYVDDDYGRNGIAALGDELTKKRCKISYKAPMYPESSRDDITDVLVKVALTESRILVVHTYTEWGLEVLDVAQYLGMTGSGYVWIATNWLSTVMDTDASLPSNAMNNIQGVLTLRMYTPASELKSNFVSRWSNLTSAGTTNRHVGLSAYGLYAYDTVWVLAHAINAFFNQGGSISFSNDSRLTKLRGGSLHLDAMSIFDGGNLLLQSILQVNMTGVTGPIKFNSDHSLIRPAYEVINVIGTGVRRIGYWSNYSGLSVVPPAMLYTKPPNRTSTNQRLYDAIWPGQAAQTPRGWVFPSNGRQLIIGVPDRVSYREFISRVKGTDMFKGYCIDVFTAALSLLPYAVPYKLVPFGDGIHNPSCTDLVRLITTGVYDAAIGDIAIVTNRTRMVDFTQPYIESGLVVVAPIKTSNSNAWAFLKPFSKNMWIVTGTFFLLVGAVVWILEHRINDEFRGPPRRQFVTILWFSFSTLFFAHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLQTSNDPIGYQQGSFAVNYLSEELNIHKSRLVPLNSAEDYAKALRDGPKKGGVAAVVDERAYIELFLSTRCEFTIVGQEFTKSGWGFAFPRDSPLAVDMSTAILKLSETGDLQRIHDKWLKGSACRSQDAKLAVDRLQLRSFWGLYAICGLACLVALFIYAILMVRQFSKHYIEESDSSVQNSRSGRLQTFLSFVDEKEEDVKSRSKRRQMEMASTRSTYEDESLSSSKRRHIELSSNKSTITSDQV* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1421 938 Gene3D - 582 720 - -
Vvi7g1421 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Vvi7g1421 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Vvi7g1421 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Vvi7g1421 938 MobiDBLite consensus disorder prediction 893 938 - -
Vvi7g1421 938 FunFam Glutamate receptor 466 582 - -
Vvi7g1421 938 Gene3D - 455 581 - -
Vvi7g1421 938 Pfam Receptor family ligand binding region 51 409 IPR001828 -
Vvi7g1421 938 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Vvi7g1421 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 887 IPR015683 -
Vvi7g1421 938 FunFam Glutamate receptor 147 310 - -
Vvi7g1421 938 Gene3D - 744 818 - -
Vvi7g1421 938 Gene3D - 50 399 - -
Vvi7g1421 938 MobiDBLite consensus disorder prediction 893 907 - -
Vvi7g1421 938 Gene3D - 147 424 - -
Vvi7g1421 938 FunFam Glutamate receptor 582 712 - -
Vvi7g1421 938 SUPERFAMILY Periplasmic binding protein-like I 27 463 IPR028082 -
Vvi7g1421 938 PIRSF IGluLR_plant 1 938 IPR017103 -
Vvi7g1421 938 SUPERFAMILY Periplasmic binding protein-like II 449 813 - -
Vvi7g1421 938 FunFam Glutamate receptor 708 815 - -
Vvi7g1421 938 CDD GluR_Plant 469 811 - -
Vvi7g1421 938 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Vvi7g1421 938 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Vvi7g1421 938 Pfam Bacterial extracellular solute-binding proteins, family 3 519 812 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1421 Vvi-Chr7 18314255 18318202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1421 3 903 Ion Channels AT3G51480 62.389 0.0 1208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1421 K05387 - vvi:100262768 1857.42