Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1420 ATGGGTCCGGGAACTGAAGTCTCGCCTCACACCATCTTAGCAGAAGGAGGAGGATGCTGTAAGGGCAATGTGGGTTCAGCCATGGAGGATATGAATGATGAGACATTGGACCATTCCAACCAGTTGAACATTGGGAAACCTCCTAGAAGCCTCTCTGTTATGCGGCATTGCATCAGCTCAGCTAGATTGACCGGCGCAGCTGATTGGGAGTCTGATATTGGCATTATTAGCTTAAAATCACCATCAAGTGAGAAATCTGGTTATTTACCCGTGCTTCGTTCGGGAAGCTGGTCTGAGATAGGGCCCAAACAATATATGGAGGACGAGTACATCTGCATCGATAATTTTCACAAGCATTTTGGTGCAGCTCCAAACATCCCTTCTCCTGGAGCATTTTATGGGGTGTTTGATGGACACGGTGGCATTGATGCAGCATCATTTACCAGAAAGAACATCCTCAAGTTTATTGTTGAGGATGCCCATTTCCCAGTAGGCATAAAAAAGGCTGTTAAGAGTGCTTTTGCAAAAGCTGATCATGCATTTGCTGATGCTAGCTCTCTTGATAGATCCTCTGGAACCACTGCTTTGATTGCCCTAATTTTTGGAAGTACCATGCTGGTCGCTAATGCTGGGGATTCACGAGCCGTATTGGGCAAGCGGGGAAGAGCAGTTGAGCTCTCTAAAGACCACAAACCCAACTGCACATCTGAGAGACTAAGAATTGAGAAACTGGGCGGTGTCATTTATGATGGCTACCTCAATGGGCAACTATCAGTGGCCCGTGCTCTTGGAGACTGGCACATGAAGGGTCCCAAAGGTTCAAACTGCCCCCTAAGCTCCGAGCCAGAACTGCAGGAAATAATCCTCACAGAGGAAGACGAATTCCTGATACTAGGCTGCGATGGCCTGTGGGACGTGATGAGTAGCCAGTGTGCGGTGACGATGACTAGGAAGGAGCTCATGTCACACAATGACCCCGAGAGGTGCTCAAAAGAGCTTGTCAGAGAGGCACTGAAGCGCAACTCCTGTGACAACCTGACAGTAGTTGTGGTATGTTTCTCCCCAGACCCACCTCCACGGATCGAAATCCCGAAATCCCAGAGGAGGAGGAGCATATCAGCAGAAGGGCTGGACCTTCTCAAGGGTGTTTTGAACAGTAACATATAA 1167 0.485 MGPGTEVSPHTILAEGGGCCKGNVGSAMEDMNDETLDHSNQLNIGKPPRSLSVMRHCISSARLTGAADWESDIGIISLKSPSSEKSGYLPVLRSGSWSEIGPKQYMEDEYICIDNFHKHFGAAPNIPSPGAFYGVFDGHGGIDAASFTRKNILKFIVEDAHFPVGIKKAVKSAFAKADHAFADASSLDRSSGTTALIALIFGSTMLVANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHMKGPKGSNCPLSSEPELQEIILTEEDEFLILGCDGLWDVMSSQCAVTMTRKELMSHNDPERCSKELVREALKRNSCDNLTVVVVCFSPDPPPRIEIPKSQRRRSISAEGLDLLKGVLNSNI* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1420 388 Gene3D - 78 356 IPR036457 -
Vvi7g1420 388 Pfam Protein phosphatase 2C 103 345 IPR001932 -
Vvi7g1420 388 SUPERFAMILY PP2C-like 86 354 IPR036457 -
Vvi7g1420 388 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Vvi7g1420 388 ProSiteProfiles PPM-type phosphatase domain profile. 93 353 IPR001932 -
Vvi7g1420 388 SMART PP2C_SIG_2 108 353 IPR001932 -
Vvi7g1420 388 FunFam Probable protein phosphatase 2C 22 78 356 - -
Vvi7g1420 388 SMART PP2C_4 83 351 IPR001932 -
Vvi7g1420 388 CDD PP2Cc 93 353 IPR001932 -
Vvi7g1420 388 PANTHER PROTEIN PHOSPHATASE 2C 80 351 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1420 Vvi-Chr7 18304809 18308809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1420 6 385 PP2C-type Phosphatase Gene Family AT2G33700 67.979 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vvi7g1420 PP2C 2.4e-71 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1420 K14803 - vvi:100243948 781.941