Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1417 ATGTCGTGTTCATCGTCGTCGGCGTCGGAGGAAGAGGACGAGGGCACCGACTCCTACCGCAAAGGAGGCTACCACGCCGTCCGAGTCGGCGATCCGTTCTCCGGAGGTCGGTACATCGCGCAGAGGAAGCTCGGTTGGGGCGAGTTCTCCACCGTCTGGCTTGCTTACGACACGCGATCCTCTAAATACGTTGCTCTAAAGATCCAGAAAAGTGCAGTACAATTTGCTCAAGCTGCTCTTCATGAGATTGAAGTCCTTTCAGCTATTGCTAATGGTGACCCCTCAAATTCCAAGTGTGTTGTGCGACTGATTGACCATTTTAAGCACACAGGGCCAAATGGACAGCATGTCTGCATGGTACTTGAATTTCTTGGTGATAGTATACTTCGGCTGATCAAGTATAACCGTTATAAAGGGCTTGAATTTAATAAAGTTCGGGAGATCTGCAAATGCATTTTGACAGGTCTGGATTACATGCATAGAGAACTTGGTATAATCCACACAGACCTAAAACCTGAAAATATCCTTCTCTTTTCCACCATTGATCCTGCCAAAGACCCAATCAGGTCTGGCCTAACCCCAATTCTTGAAAGGCCTGAAGGAAACCCCACTGGTGGAGTTACTATAAATAGTATTGAGAAAAAGCTGAAAGCAAGGGCAAGGAGAGCAGTGGCTAAAATATCAGGAAAAAGAGCTTCAATGGGGGGAGAGACTCCAAAGGCCGAGAGATCTCTGGACGGGATTGATGTGAGATGCAAGATTGTGGATTTTGGAAATGCATGTTGGGCAGACAGACAATTCACAGGAGAAATTCAAACAAGGCAGTATCGAGCTCCTGAAGTTGTGCTCCAGGCTGGGTACTCCACCTCTGTTGATATGTGGTCGTTTGCTTGCACTGCCTTTGAGCTTGCTACTGGTGACATGCTGTTTGCTCCCAAAAATGGACAAGGTTATAGCGAGGATGAGGATCACCTTGCTCTGATGATGGAACTCCTTGGAAAAATACCTCGGAAGGTAGCCATTGGGGGAGCTCGATCAAAAGACCTCTTTGACAGACATGGGGATCTGAAAAGAATCCGAAGGCTGAAATTCTGGCCACTTGACCGAATACTGGTTGATAGATACAAATTTTCTGAATCTGATGCACGTGAGTTTGCAGACTTTCTGGTTCCCCTTCTCGATTTTGCACCAGAGAAGCGGCCAACTGCTCAGCAGTGCCTGCAACACCCATGGCTCAATCTCACCAATTTGGCCGCGAATGAGACCAAGAGCAAATCTAACATGGAGAAATTAGATGTTGGGATGAGCAAACTTCAGATTGAGGTGGGTAAGTGA 1335 0.4719 MSCSSSSASEEEDEGTDSYRKGGYHAVRVGDPFSGGRYIAQRKLGWGEFSTVWLAYDTRSSKYVALKIQKSAVQFAQAALHEIEVLSAIANGDPSNSKCVVRLIDHFKHTGPNGQHVCMVLEFLGDSILRLIKYNRYKGLEFNKVREICKCILTGLDYMHRELGIIHTDLKPENILLFSTIDPAKDPIRSGLTPILERPEGNPTGGVTINSIEKKLKARARRAVAKISGKRASMGGETPKAERSLDGIDVRCKIVDFGNACWADRQFTGEIQTRQYRAPEVVLQAGYSTSVDMWSFACTAFELATGDMLFAPKNGQGYSEDEDHLALMMELLGKIPRKVAIGGARSKDLFDRHGDLKRIRRLKFWPLDRILVDRYKFSESDAREFADFLVPLLDFAPEKRPTAQQCLQHPWLNLTNLAANETKSKSNMEKLDVGMSKLQIEVGK* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1417 444 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Vvi7g1417 444 FunFam Protein kinase superfamily protein 24 123 - -
Vvi7g1417 444 MobiDBLite consensus disorder prediction 1 23 - -
Vvi7g1417 444 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vvi7g1417 444 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Vvi7g1417 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vvi7g1417 444 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1417 444 CDD STKc_SRPK 27 412 - -
Vvi7g1417 444 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1417 444 FunFam Serine/threonine-protein kinase SRPK 116 412 - -
Vvi7g1417 444 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 231 427 - -
Vvi7g1417 444 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1417 444 Pfam Protein kinase domain 251 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1417 444 SUPERFAMILY Protein kinase-like (PK-like) 33 413 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1417 Vvi-Chr7 18289571 18294122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1417 4 427 EF-hand Containing Proteins AT5G22840 51.471 4.74e-178 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vvi7g1417 Pkinase 2.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1417 K08832 - vvi:100247401 877.085