Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1408 ATGGCCGTGACTATCACCGCCTACAAGGATAACACCTTCGATTTTACCGTGAAGTCTCCGTCGGTCACCTGGTACCTCAAGAAGGCCGCCAGAATTGAGTTAGGCAGCGGCCGCCCTGGTCACATCGTCGCCTCCAGCGTGACCTTAAAGCACATCTACGAGATTGCGAAGAAGGATATCACTCCAATGGGTGGGTTTCCTCACTGTGGTGTGGTTAAGGATGATTATGTTTTGATCAAGGGGTGCTGTGTTGGGCCAAAGAAGAGGGTCGTTACCCTTAGACAGTCCCTTCTCAAGCAGACATCCCGTGTGGCCCTGGAAGAGATTAAACTTAAGTTCATTGACACAGCTTCGAAGTTTGGGCATGGAAGATTCCCTACTACACAAGAGAAGCAGAAATTCTATGGTCGGCTTAAGGCTTGA 423 0.4988 MAVTITAYKDNTFDFTVKSPSVTWYLKKAARIELGSGRPGHIVASSVTLKHIYEIAKKDITPMGGFPHCGVVKDDYVLIKGCCVGPKKRVVTLRQSLLKQTSRVALEEIKLKFIDTASKFGHGRFPTTQEKQKFYGRLKA* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1408 140 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 54 135 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vvi7g1408 140 Pfam Ribosomal protein L11, RNA binding domain 18 58 IPR020783 GO:0003735|GO:0005840|GO:0006412
Vvi7g1408 140 Gene3D Translation factors 21 140 - -
Vvi7g1408 140 FunFam Ribosomal protein L3 24 140 - -
Vvi7g1408 140 SUPERFAMILY Translation proteins 31 121 IPR009000 -
Vvi7g1408 140 Pfam Ribosomal protein L3 50 121 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1408 Vvi-Chr7 18195546 18196733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1408 37 137 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 70.297 1.82e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1408 K02925 - vvi:100260533 166.007