Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi7g1405 | ATGGACTTTGACGAGTACGAGTATCTGGAAAAGGCGGTGGAAGAGCCTGAGAATCGGAAGAAGAAAGACGGAGGGGAGAAGAGCGAGAGGAGTTACAGAAAGAGGGAAGGCGGTGAGGAAGACGACGATGACGAACGAGGAGAAGGGCGGAGGAGCAAGAGGTCGAGAGGCGAAGAGTTGAACGGCGAAAGAAGGGAGCGGCACGAAAAGGATCGGCGGAGAAGCGGCAGAGATGGCGAGAGAGAGTCTAAGGATAGGAAATCCGAGAGAGAAAAGGATCGGGGACGTGAGAGAGAGAAGGAGAGAGGGAGGGACAGAGAGAAAGATAAGGAGAGGGACAGAGATAAAGATAAGGAGAGGGACAGAGAGAAAGATAAGGAAAGGGAAAGAGAGAGAGATAAAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGATAAGGAAAGGGAGAGAAAGGAGAGGGAGAGAGAGAAGGAAAAGGAGAGAGAGAAGGCGAAGGAGAAGGAGAGAAGAGAGTTGGAGAAGGAGGAGAGGGAGGAGAAAGAGAGGTCGCGCAGAAGTACAAGCAGGTCGAGGCGGCATGAGAGTGATCGTGATAGGGAATTGAGAGAGAGATCACGAGAAATTGAGCCAAGAGAGAGCAGGAGATTTAAAGATAAGAAAGAAGCTGTGGAGCCTGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCTCTGAAGGCAACTGAGAGAGATGTTTATGAGTTTTTCTCAAAAGCGGGCAAGGTGAGGGATGTTCGGTTGATCATGGATCGGAATTCAAGAAGGTCAAAAGGAGTTGGATATATCGAATTTTATGACGCAATGTCTGTGCCAATGGCAATTGCTCTCTCTGGTCATCTTCTTCATGGACAACCTGTGATGGTTAAGCCATCAGAGGCTGAGAAGAACCTTGTTCAGTCCAATGCTTCTGGTGCAGTCTCAGGAGGTATCGCAGGACCATATGGAGCAGTTGATAGAAAGTTGTATGTGGGGAACTTACACTTCAACATGACAGAACTTCAACTTCGACAGATTTTTGAACCATTTGGTCGTGTGGAGCTTGTGCAATTACCCCTTGATCTTGAGACAGGACAGTGCAAAGGTTTTGGGTTTGTTCAATTTGCTGAACTTGAGCATGCAAAGGCAGCACAAAATTTGAATGGGAAATTGGATATTGCTGGTCGAATAATCAAGGTTTCATCTGTTACAGATCATATTGGAGTGCAAGATGCTGGAGCAAAAGCTGCCGATTTCGATGATGATGATGGGGGTGGTTTGTCATTAAATGCTCAATCCAGAGCATTGCTCATGCAGAAACTGGATCGTACTGGTATTGCCTCAAGTATTGCAGGCTCCCTTGGTGTGCCCATGCTTAATGGGTCAGCTCCAAATCAACAAGCCATTAGCTTGTCTATTAATGGCCAAGCTGCTGTTTCTGCTCCAGCTCTTCCAACACAAGTTGTCACTTCCCCAGCCTCTGAACCTGTTGGAACCCCCACCGAGTGCTTACTGTTGAAGAATATGTTCGATCCAGCCACTGAGATTGATCCAGATTTTGATTTGGATATCAAAGAGGAGGTGCAAGAAGAATGTTCTAATTTTGGCCGGGTGAAGCATATCTATGTGGAAAAGCATAGTGCTGGTTATGTGTATTTGCGGTTTGAAACAGTGGAAGCGGCAGTCACTGCTCAACGTGCAATGCATATGAGATGGTTTGCCCGCAGGTTGATTTCAGCCATATTCCTGCAACCCAGGGATTATGAAGCCAAGTTTAAAGGTGAAACCTGA | 1827 | 0.4729 | MDFDEYEYLEKAVEEPENRKKKDGGEKSERSYRKREGGEEDDDDERGEGRRSKRSRGEELNGERRERHEKDRRRSGRDGERESKDRKSEREKDRGREREKERGRDREKDKERDRDKDKERDREKDKERERERDKERERERERERERDKERERKEREREKEKEREKAKEKERRELEKEEREEKERSRRSTSRSRRHESDRDRELRERSREIEPRESRRFKDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGHLLHGQPVMVKPSEAEKNLVQSNASGAVSGGIAGPYGAVDRKLYVGNLHFNMTELQLRQIFEPFGRVELVQLPLDLETGQCKGFGFVQFAELEHAKAAQNLNGKLDIAGRIIKVSSVTDHIGVQDAGAKAADFDDDDGGGLSLNAQSRALLMQKLDRTGIASSIAGSLGVPMLNGSAPNQQAISLSINGQAAVSAPALPTQVVTSPASEPVGTPTECLLLKNMFDPATEIDPDFDLDIKEEVQEECSNFGRVKHIYVEKHSAGYVYLRFETVEAAVTAQRAMHMRWFARRLISAIFLQPRDYEAKFKGET* | 609 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi7g1405 | 608 | Gene3D | - | 335 | 428 | IPR012677 | - | |
| Vvi7g1405 | 608 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 115 | 604 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Vvi7g1405 | 608 | MobiDBLite | consensus disorder prediction | 1 | 234 | - | - | |
| Vvi7g1405 | 608 | Coils | Coil | 116 | 187 | - | - | |
| Vvi7g1405 | 608 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 236 | 313 | IPR000504 | GO:0003723 | |
| Vvi7g1405 | 608 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 431 | 532 | IPR029123 | - | |
| Vvi7g1405 | 608 | Gene3D | - | 509 | 608 | IPR012677 | - | |
| Vvi7g1405 | 608 | SUPERFAMILY | RNA-binding domain, RBD | 185 | 311 | IPR035979 | GO:0003676 | |
| Vvi7g1405 | 608 | SUPERFAMILY | RNA-binding domain, RBD | 339 | 600 | IPR035979 | GO:0003676 | |
| Vvi7g1405 | 608 | Gene3D | - | 163 | 321 | IPR012677 | - | |
| Vvi7g1405 | 608 | MobiDBLite | consensus disorder prediction | 12 | 234 | - | - | |
| Vvi7g1405 | 608 | CDD | RRM1_RBM39_like | 237 | 309 | - | - | |
| Vvi7g1405 | 608 | SMART | rrm1_1 | 515 | 592 | IPR000504 | GO:0003723 | |
| Vvi7g1405 | 608 | SMART | rrm1_1 | 237 | 309 | IPR000504 | GO:0003723 | |
| Vvi7g1405 | 608 | SMART | rrm1_1 | 340 | 413 | IPR000504 | GO:0003723 | |
| Vvi7g1405 | 608 | NCBIfam | splicing factor, CC1-like family | 118 | 601 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Vvi7g1405 | 608 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 339 | 417 | IPR000504 | GO:0003723 | |
| Vvi7g1405 | 608 | CDD | RRM2_RBM23_RBM39 | 341 | 418 | - | - | |
| Vvi7g1405 | 608 | FunFam | Splicing factor CC1-like | 321 | 428 | - | - | |
| Vvi7g1405 | 608 | FunFam | Splicing factor CC1-like | 157 | 320 | - | - | |
| Vvi7g1405 | 608 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 341 | 408 | IPR000504 | GO:0003723 | |
| Vvi7g1405 | 608 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 243 | 305 | IPR000504 | GO:0003723 | |
| Vvi7g1405 | 608 | CDD | RRM3_RBM39_like | 513 | 595 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi7g1405 | Vvi-Chr7 | 18155044 | 18171213 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi7g1405 | 325 | 412 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 38.889 | 1.83e-06 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi7g1405 | K13091 | - | vvi:100243992 | 770 |