Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1405 ATGGACTTTGACGAGTACGAGTATCTGGAAAAGGCGGTGGAAGAGCCTGAGAATCGGAAGAAGAAAGACGGAGGGGAGAAGAGCGAGAGGAGTTACAGAAAGAGGGAAGGCGGTGAGGAAGACGACGATGACGAACGAGGAGAAGGGCGGAGGAGCAAGAGGTCGAGAGGCGAAGAGTTGAACGGCGAAAGAAGGGAGCGGCACGAAAAGGATCGGCGGAGAAGCGGCAGAGATGGCGAGAGAGAGTCTAAGGATAGGAAATCCGAGAGAGAAAAGGATCGGGGACGTGAGAGAGAGAAGGAGAGAGGGAGGGACAGAGAGAAAGATAAGGAGAGGGACAGAGATAAAGATAAGGAGAGGGACAGAGAGAAAGATAAGGAAAGGGAAAGAGAGAGAGATAAAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGATAAGGAAAGGGAGAGAAAGGAGAGGGAGAGAGAGAAGGAAAAGGAGAGAGAGAAGGCGAAGGAGAAGGAGAGAAGAGAGTTGGAGAAGGAGGAGAGGGAGGAGAAAGAGAGGTCGCGCAGAAGTACAAGCAGGTCGAGGCGGCATGAGAGTGATCGTGATAGGGAATTGAGAGAGAGATCACGAGAAATTGAGCCAAGAGAGAGCAGGAGATTTAAAGATAAGAAAGAAGCTGTGGAGCCTGAAGCTGATCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCTCTGAAGGCAACTGAGAGAGATGTTTATGAGTTTTTCTCAAAAGCGGGCAAGGTGAGGGATGTTCGGTTGATCATGGATCGGAATTCAAGAAGGTCAAAAGGAGTTGGATATATCGAATTTTATGACGCAATGTCTGTGCCAATGGCAATTGCTCTCTCTGGTCATCTTCTTCATGGACAACCTGTGATGGTTAAGCCATCAGAGGCTGAGAAGAACCTTGTTCAGTCCAATGCTTCTGGTGCAGTCTCAGGAGGTATCGCAGGACCATATGGAGCAGTTGATAGAAAGTTGTATGTGGGGAACTTACACTTCAACATGACAGAACTTCAACTTCGACAGATTTTTGAACCATTTGGTCGTGTGGAGCTTGTGCAATTACCCCTTGATCTTGAGACAGGACAGTGCAAAGGTTTTGGGTTTGTTCAATTTGCTGAACTTGAGCATGCAAAGGCAGCACAAAATTTGAATGGGAAATTGGATATTGCTGGTCGAATAATCAAGGTTTCATCTGTTACAGATCATATTGGAGTGCAAGATGCTGGAGCAAAAGCTGCCGATTTCGATGATGATGATGGGGGTGGTTTGTCATTAAATGCTCAATCCAGAGCATTGCTCATGCAGAAACTGGATCGTACTGGTATTGCCTCAAGTATTGCAGGCTCCCTTGGTGTGCCCATGCTTAATGGGTCAGCTCCAAATCAACAAGCCATTAGCTTGTCTATTAATGGCCAAGCTGCTGTTTCTGCTCCAGCTCTTCCAACACAAGTTGTCACTTCCCCAGCCTCTGAACCTGTTGGAACCCCCACCGAGTGCTTACTGTTGAAGAATATGTTCGATCCAGCCACTGAGATTGATCCAGATTTTGATTTGGATATCAAAGAGGAGGTGCAAGAAGAATGTTCTAATTTTGGCCGGGTGAAGCATATCTATGTGGAAAAGCATAGTGCTGGTTATGTGTATTTGCGGTTTGAAACAGTGGAAGCGGCAGTCACTGCTCAACGTGCAATGCATATGAGATGGTTTGCCCGCAGGTTGATTTCAGCCATATTCCTGCAACCCAGGGATTATGAAGCCAAGTTTAAAGGTGAAACCTGA 1827 0.4729 MDFDEYEYLEKAVEEPENRKKKDGGEKSERSYRKREGGEEDDDDERGEGRRSKRSRGEELNGERRERHEKDRRRSGRDGERESKDRKSEREKDRGREREKERGRDREKDKERDRDKDKERDREKDKERERERDKERERERERERERDKERERKEREREKEKEREKAKEKERRELEKEEREEKERSRRSTSRSRRHESDRDRELRERSREIEPRESRRFKDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGHLLHGQPVMVKPSEAEKNLVQSNASGAVSGGIAGPYGAVDRKLYVGNLHFNMTELQLRQIFEPFGRVELVQLPLDLETGQCKGFGFVQFAELEHAKAAQNLNGKLDIAGRIIKVSSVTDHIGVQDAGAKAADFDDDDGGGLSLNAQSRALLMQKLDRTGIASSIAGSLGVPMLNGSAPNQQAISLSINGQAAVSAPALPTQVVTSPASEPVGTPTECLLLKNMFDPATEIDPDFDLDIKEEVQEECSNFGRVKHIYVEKHSAGYVYLRFETVEAAVTAQRAMHMRWFARRLISAIFLQPRDYEAKFKGET* 609
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1405 608 Gene3D - 335 428 IPR012677 -
Vvi7g1405 608 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 115 604 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vvi7g1405 608 MobiDBLite consensus disorder prediction 1 234 - -
Vvi7g1405 608 Coils Coil 116 187 - -
Vvi7g1405 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 313 IPR000504 GO:0003723
Vvi7g1405 608 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 431 532 IPR029123 -
Vvi7g1405 608 Gene3D - 509 608 IPR012677 -
Vvi7g1405 608 SUPERFAMILY RNA-binding domain, RBD 185 311 IPR035979 GO:0003676
Vvi7g1405 608 SUPERFAMILY RNA-binding domain, RBD 339 600 IPR035979 GO:0003676
Vvi7g1405 608 Gene3D - 163 321 IPR012677 -
Vvi7g1405 608 MobiDBLite consensus disorder prediction 12 234 - -
Vvi7g1405 608 CDD RRM1_RBM39_like 237 309 - -
Vvi7g1405 608 SMART rrm1_1 515 592 IPR000504 GO:0003723
Vvi7g1405 608 SMART rrm1_1 237 309 IPR000504 GO:0003723
Vvi7g1405 608 SMART rrm1_1 340 413 IPR000504 GO:0003723
Vvi7g1405 608 NCBIfam splicing factor, CC1-like family 118 601 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vvi7g1405 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 417 IPR000504 GO:0003723
Vvi7g1405 608 CDD RRM2_RBM23_RBM39 341 418 - -
Vvi7g1405 608 FunFam Splicing factor CC1-like 321 428 - -
Vvi7g1405 608 FunFam Splicing factor CC1-like 157 320 - -
Vvi7g1405 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 408 IPR000504 GO:0003723
Vvi7g1405 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 305 IPR000504 GO:0003723
Vvi7g1405 608 CDD RRM3_RBM39_like 513 595 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi7g1405 Vvi-Chr7 18155044 18171213 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1405 325 412 Eukaryotic Initiation Factors Gene Family AT4G34110 38.889 1.83e-06 48.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1405 K13091 - vvi:100243992 770