Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1401 ATGTGCGTGTTGAAGGTGGCGAACGCGAGAAAATCTGAACAGAGATTGAGGGTTGAGGGGGTCAGGGACGATGAGATGGACGGCGGCGCTGCCTCAGGGGTGATGTTTCCGGGGCATAACAGAGAGAGGGAGATGTCAGCAATGGTGACTGCTCTCACCAATGTGGTGGCCGGCCACGTTTCTGATGATCTGGTGAACCAGACTGGCTCTGACCCCTGTTGTTTGCTGGGTTCTTGTTCGTGGGGCGCAGGCCACAAGAGAGGACGAGATGATCAAGGCCATGTCTCTGAATCAGTTTCCACTATTTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAGTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTTCATTAATGGTTCCCACATATGAGTATGTTGATACGTACAGAGGAGAGCCAAGGAGGAGATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCAGCTGAAATAAGGGATCCCTACAGAGCTGCCAGGGTGTGGTTGGGCACATTCGACTCTGCTGAAGCCGCAGCAAGAGCTTATGATGAGGCTGCTCTCCGGTTCAGAGGCAACAAAGCTAAACTCAACTTCCCTGAAAACGTCCAGCTCCGGCCATCTCCCTCCGGTTCTCAGGCAACCCAGTTGGCCATTTCCGATTCTCCAGAAACCCTTTTCTCGGTTCCTTCATACACCAACCCCATAGTTCAATCTCAACCACTTCACCGGAGCCGGAGCTCTGAGCTTCCCGGAGATTACTTCAACTATTCTCAGATGGGTTCGAGCTCTTCCGATTATTTTCCGAGGCAGCCCATGAATTTATTAGACCAAATGCGCCTGGCTTCTCCTTTACAATCTTCGTCCTCGTTGTCTTCTTCTTCTCCTCTTGGTTCCTCTGTTTCATCTGCTTCATCATCTCCACCTCCTTTTTCCCCGTTTTTTCCGCCACAGCCTCCGTCCGCCGGTCAGAGTGGTGGAGCAGATATTCCGGCACCGCCATGGTCGGACACCAGCCAGTGA 1059 0.5231 MCVLKVANARKSEQRLRVEGVRDDEMDGGAASGVMFPGHNREREMSAMVTALTNVVAGHVSDDLVNQTGSDPCCLLGSCSWGAGHKRGRDDQGHVSESVSTISRAFGDLSHGGSSSFRVGEGSVLNTNTTAASESSLMVPTYEYVDTYRGEPRRRYRGVRQRPWGKWAAEIRDPYRAARVWLGTFDSAEAAARAYDEAALRFRGNKAKLNFPENVQLRPSPSGSQATQLAISDSPETLFSVPSYTNPIVQSQPLHRSRSSELPGDYFNYSQMGSSSSDYFPRQPMNLLDQMRLASPLQSSSSLSSSSPLGSSVSSASSSPPPFSPFFPPQPPSAGQSGGADIPAPPWSDTSQ* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1401 352 MobiDBLite consensus disorder prediction 298 320 - -
Vvi7g1401 352 MobiDBLite consensus disorder prediction 298 352 - -
Vvi7g1401 352 FunFam Ethylene-responsive transcription factor 2 154 213 - -
Vvi7g1401 352 SMART rav1_2 155 218 IPR001471 GO:0003700|GO:0006355
Vvi7g1401 352 Gene3D AP2/ERF domain 154 214 IPR036955 GO:0003700|GO:0006355
Vvi7g1401 352 PANTHER DNA-BINDING DOMAIN 136 292 IPR044808 GO:0003700|GO:0009873
Vvi7g1401 352 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Vvi7g1401 352 PRINTS Ethylene responsive element binding protein signature 178 194 IPR001471 GO:0003700|GO:0006355
Vvi7g1401 352 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700|GO:0006355
Vvi7g1401 352 ProSiteProfiles AP2/ERF domain profile. 155 212 IPR001471 GO:0003700|GO:0006355
Vvi7g1401 352 Pfam AP2 domain 155 204 IPR001471 GO:0003700|GO:0006355
Vvi7g1401 352 CDD AP2 163 214 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1401 Vvi-Chr7 18105526 18106855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1401 1 291 AP2-EREBP Transcription Factor Family AT5G64750 38.739 8.92e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi7g1401 AP2 3.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1401 - - vvi:100264647 613.609