Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1395 ATGCCCGCCGAATCCAAGAGAGGACTAACCGTCAAAACTACCAAAAACTTCATAGTGAAAGCAGTCCAAGTCGTGGAAAATGGAGAAAACAGACACTTCAATCTTTTTCCATTCTCCACCCAATCCCCATGGCGGAGAAAGCGGAGTCATTTCCGAAGACTCTTACTCCCAGTTTTCATCCATAATTCCAATTCTCGCCGGCTCCATCTGTCTTCTTCTCACCTCCTCTTTTTCATCAAAATTTATTCTCTTCCCATCATCGCCATCTATCCTTTCTCTCCTTCCTTACTATGTCATCTTGCTGTTCCCGCAGAAGAACCACCGGGGATTCCCACAGATTCTATGGGGTGTGTTCAGACTAGACCTTCCGTCTACTCCCCATCTGAGGGGCTTGTCAAGCTGAAACTGCAGAATGGGTACGCGAAGAGAGGATATGGAGGAAGACCCATCCGTCATAAGCCACCAGAGAAACTGGATGGGAAGAGCGCCGGTACGCTTGTGGACGGCGGCGGTGGTGGTGGAGGAGGAGAGGAGATGGTTGGCAGAGAAGATGAGAATAAGCTTAATGGCGGTGGTGGGAATGTTTCTCAGAAGATTACAGTGAAGAGGATTGGAGGAGACGAGCTGGTTGATGGGTGGCCCAAGTGGCTTGTCGACAACATCCACAGAGATGCTTTGGTAGGCTTGGTTCCGAAAAGTGTCGATTCCTATGAGAAGCTTGCCAAGGTAGGCCAGGGAACATACAGCAATGTGTACAAAGCTCGGGACAGAGAGACTCGGAAGATTGTTGCTTTGAAGAAGGTGAGGTTTGATACATCAGAGGCCGAGAGCGTGAAGTTCATGGCAAGAGAGATTATGATACTGCAGAAGCTTGATCACCCCAACATCATCAAGCTTGAAGGACTGGCCACATCCAGAATGCAGTATAGTCTTTATCTGGTTTTCGATTTCATGCCAACTGACTTAACCAGAGTCATTTCCCGCCCAAACGGGAGGCTAACTGAACCACAGGTGAAGTTCTATATGCAGCAACTGCTAGCAGGCGTCCAGCATTGCCATGAGAGGGGGATTTTACACAGGGACCTTAAAGGATCAAATTTGTTGATAGACAAAAATGGGGTGCTCAAGATAGCAGATTTTGGGCTTGCAAATTTTCTAGACCCAAAACCAAAGAAGCCCCTTACAAGTAGAGTGGTGACACTTTGGTACAGAGCTCCAGAGCTGCTGTTAGGTTCTACTGACTATGGAGTTGGTATTGATCTTTGGAGTGTGGGTTGCCTTCTTGCAGAAATGTTCACTGGAAGGCCTATCATGCCTGGTAGAACTGAGGTAGAGCAGCTTCACAGGATTTTTAAGCTGTGTGGGTCTCCCTCGGAGGATTACTGGAAAAAGTTGAGGCTACCAACAAGCTTCAGACCACCCCAACAATACAAACCTAGTTTTCAAGACGCATTCAGGGATTTTCCCTCCTCTTCTTTCGCTCTCTTGACCTCCCTTCTCGCTCTGGACCCTGCCTTTCGAGGCAGTGCCGCGACCGCTCTTGAAAGCGGGTTCTTTACTTCGAGCCCATTGCCGTGTGATCTTTCTGGCCTACCCGTCGTCGTCTACAAAGAGGCCGATGAGCCATCTCAAGCCAATAAGAGGAAGAACAGACACAGGACTTCGAGATCGAGGCAACAGTCTCGAACACATAATGAAGGGCGTAGGAAAAAGGATCCGACTGCAGAAGAAGCTAAAGGAGATTCAGGAACTTCTTCACAGGTACAAATTTTGCTCTCAAGTTTACTGATTTAG 1794 0.481 MPAESKRGLTVKTTKNFIVKAVQVVENGENRHFNLFPFSTQSPWRRKRSHFRRLLLPVFIHNSNSRRLHLSSSHLLFFIKIYSLPIIAIYPFSPSLLCHLAVPAEEPPGIPTDSMGCVQTRPSVYSPSEGLVKLKLQNGYAKRGYGGRPIRHKPPEKLDGKSAGTLVDGGGGGGGGEEMVGREDENKLNGGGGNVSQKITVKRIGGDELVDGWPKWLVDNIHRDALVGLVPKSVDSYEKLAKVGQGTYSNVYKARDRETRKIVALKKVRFDTSEAESVKFMAREIMILQKLDHPNIIKLEGLATSRMQYSLYLVFDFMPTDLTRVISRPNGRLTEPQVKFYMQQLLAGVQHCHERGILHRDLKGSNLLIDKNGVLKIADFGLANFLDPKPKKPLTSRVVTLWYRAPELLLGSTDYGVGIDLWSVGCLLAEMFTGRPIMPGRTEVEQLHRIFKLCGSPSEDYWKKLRLPTSFRPPQQYKPSFQDAFRDFPSSSFALLTSLLALDPAFRGSAATALESGFFTSSPLPCDLSGLPVVVYKEADEPSQANKRKNRHRTSRSRQQSRTHNEGRRKKDPTAEEAKGDSGTSSQVQILLSSLLI* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1395 597 FunFam probable serine/threonine-protein kinase At1g54610 224 319 - -
Vvi7g1395 597 FunFam Putative serine/threonine-protein kinase 320 559 - -
Vvi7g1395 597 ProSitePatterns Protein kinases ATP-binding region signature. 243 266 IPR017441 GO:0005524
Vvi7g1395 597 Gene3D Phosphorylase Kinase; domain 1 227 319 - -
Vvi7g1395 597 MobiDBLite consensus disorder prediction 145 177 - -
Vvi7g1395 597 CDD STKc_CDK9_like 237 519 - -
Vvi7g1395 597 MobiDBLite consensus disorder prediction 559 578 - -
Vvi7g1395 597 PANTHER CELL DIVISION PROTEIN KINASE 235 525 - -
Vvi7g1395 597 Pfam Protein kinase domain 237 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1395 597 MobiDBLite consensus disorder prediction 539 587 - -
Vvi7g1395 597 SUPERFAMILY Protein kinase-like (PK-like) 231 526 IPR011009 -
Vvi7g1395 597 SMART serkin_6 237 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1395 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Vvi7g1395 597 ProSiteProfiles Protein kinase domain profile. 237 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1395 597 Gene3D Transferase(Phosphotransferase) domain 1 320 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1395 Vvi-Chr7 18038423 18041933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1395 232 571 Core Cell Cycle Gene Families AT5G10270 44.693 3.59e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi7g1395 Pkinase 2.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1395 K08819 - vvi:100852489 1123.61