Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1390 ATGAGGACCAGACCCGAGGGAAACGTTTGCAAGCAATTTGCTGTAACTGGAACATGCCCATACGGCCCAAGGTGCCGTTTTTCTCATCAGATTCAGTCTCTACTATCAACAACCCAACAAACACCCTCCCCTTCTAGACCTCAACACACAGCTGCCACCACCCCCACCATCAAGACTGCCACCCCCACCAAGACCACCGCCGACTGGTCGCCCATGGACGACGGCATTGAGGTCGTGCTGCCAGGTTCTTCAGCAGAGAAACCAGCGTCAAGGGACGAGGTAAACACCTACATCAACAGTTTTCTCTATGGTCCCACAACTCCAAGGAGGAGACTGCCAGTTTTTGAAGAGATATGCCCTAGCAGGGAGGCTACTCCTTGA 381 0.5328 MRTRPEGNVCKQFAVTGTCPYGPRCRFSHQIQSLLSTTQQTPSPSRPQHTAATTPTIKTATPTKTTADWSPMDDGIEVVLPGSSAEKPASRDEVNTYINSFLYGPTTPRRRLPVFEEICPSREATP* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1390 126 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 9 29 IPR000571 GO:0046872
Vvi7g1390 126 ProSiteProfiles Zinc finger C3H1-type profile. 4 32 IPR000571 GO:0046872
Vvi7g1390 126 SMART c3hfinal6 4 31 IPR000571 GO:0046872
Vvi7g1390 126 SUPERFAMILY CCCH zinc finger 4 31 IPR036855 GO:0046872
Vvi7g1390 126 MobiDBLite consensus disorder prediction 36 74 - -
Vvi7g1390 126 Gene3D - 2 36 - -
Vvi7g1390 126 MobiDBLite consensus disorder prediction 36 68 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi7g1390 zf-CCCH 7.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1390 - K18753 vvi:100262912 229.95