Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1388 ATGGCATGTGAGCTACAGCTCACCGGTTTCAGAGGACCCAAGATGAAAGCTTTTTCTCGCTCTTACTCTCAGACCTACTTGTTTTTCTTGTTTTTGTTCATGAGTTTTTTGTGTGTGGCTTTAGCGGCGGTTTCCAAGGATGCGACGCTGTTGTTGAGCTTCAAGAGGTCGCTGCCCAATCCTGGTGTGCTTCAGAACTGGGAGGAGGGCAGAGACCCATGTTACTTCACTGGAGTTACGTGCAAGGGCGGGCGAGTATCGTCTCTGGATCTCACCAGCGTGGAGTTGAATGCGGAGCTTCGATACGTGGCTACATTCCTCATGGGGATTGACCGGTTGGAGTTTCTCTCTCTGCAATCCACCAACCTCACTGGAGCTGTCTCGTCGGTTTCCGGGTCTCGTTGCGGCGCGTTGCTGAGCTCCCTGGATCTTGCCAACAACACCGTATCTGGGTCGATCTCGGATTTGGAAAATCTGGTGTCGTGCTCTTCTTTGAAGTCTCTGAACCTGTCCAGGAACAATCTGGAGTTCACCGCCGGAAGGCGGGATTCCGGCGGGGTGTTCACCGGTTTGGAGGTGCTGGACCTGTCGAACAACCGTATATCCGGCGAGAATGTGGTGGGGTGGATTTTATCCGGCGGGTGTCGTCAGCTGAAAAGCTTGGCCTTGAAGGGGAACAACGCCAATGGAAGTATACCACTCTCTGGGTGTGGAAATTTGGAGTATTTGGACGTTTCTTTCAATAATTTCTCTGCGTTTCCATCGCTGGGTCGTTGCTCCGCTCTCAACTATCTGGATCTCTCCGCCAATAAATTTTCCGGCGAGATTAAGAACCAGCTCGCGTACTGTCAGCAGCTCAACCACCTCAATCTCTCCAGCAACCACTTCACCGGCGCGATTCCGGCGCTGCCCACTGCTAATTTGGAGTACGTTTATCTCTCCGGCAACGATTTCCAGGGTGGCATACCTCTGCTTCTTGCCGACGCCTGTCCCACTCTCCTCGAGCTCAACCTCTCCTCCAACAACCTCTCCGGTACGGTCCCGAGCAACTTCCAGTCGTGTTCTTCTCTGGTATCCATTGATATATCTAGAAACAACTTCTCCGGCGTTTTGCCGATTGATACTCTTTTGAAATGGACCAATTTGAGGAAGCTCTCTTTGTCTTACAACAATTTTGTCGGTTCTTTGCCGGAATCTCTGTCCAAGTTGATGAATTTGGAGACTTTGGATGTGAGTTCCAACAATTTTTCGGGTTTGATCCCTTCCGGACTGTGTGGAGATCCCAGGAACAGCCTGAAGGAGCTTCATCTTCAGAACAATTTGTTCACTGGTCGTATACCAGAGGCTCTGAGCAACTGTTCTCAGCTGGTCTCCCTTGATCTCAGCTTCAATTACCTCACAGGGACGATCCCCTCCAGCCTGGGCTCCTTAACTAAGCTCCAGCATTTGATGCTGTGGCTGAATCAGCTCCATGGACAGATCCCAGAGGAGCTCATGAACCTCAAAACCCTCGAGAATCTGATTCTAGACTTTAACGAATTGACCGGCCCCATCCCTGACGGCCTTAGCAACTGCACCAATTTGAATTGGATCTCCCTTTCAAACAACAGGTTGAGTGGTGAGATTCCCGGGTGGATCGGTAAGCTATCCAATCTTGCCATCCTCAAGCTCGGGAACAATTCATTCTACGGTAGCATTCCGCCGGAGCTTGGGGATTGTCGCAGTTTGATATGGTTGGATCTCAATACTAATCACTTGACTGGCACCATCCCGCCCGCCCTGTTCAAACAGTCTGGTAATATCGCTGTTGGGCTGGTGACAGGGAAGAGCTATGTGTATATTAGGAATGATGGGAGTAAGGAGTGCCATGGAGCTGGGAATTTGCTGGAGTATGGGGGAATCAGAGAGGAGGAGATGGACCGTATTTCGACTAGGAATCCATGCAACTTCACTAGAGTCTACAAGGGTAGGACAAATCCCACATTCAATCATAACGGGTCTTTGATTTTTCTGGACCTTTCATATAACATGTTGGGAGGTAGCATTCCAAAGGAGTTGGGGACTCCTTATTATCTGTATATTCTGAATTTGGCTCATAACAATCTCTCTGGTGCCATTCCTGTGGAGCTTGGAGGCTTGAAGAATGTTAATATTCTTGATTTCTCCTACAATAGGCTTCAAGGGACAATTCCACAATCTCTGTCTGGCCTTTCCATGCTGAATGACATTGATCTGTCTAACAACAATCTATCTGGGACGATTCCTCAATCAGGTCAATTCTTAACGTTTCCGAATTTGAGCTTCGCTAACAATTCTGGCCTCTGTGGGTTTCCCCTTTCCCCCTGTGGGGGAGGTCCCAACTCGATTTCAAGTACCCAGCATCAGAAATCTCATCGGAGACAAGCATCCCTTGTGGGGAGTGTGGCCATGGGCTTATTGTTCTCCCTGTTTTGCATATTTGGTTTGATCATAGTTGCCATTGAGACGAGAAAAAGGAGGAAAAAGAAGGATTCTACTCTTGACGTTTATATTGATAGTAATTCCCATTCGGGCACTGCAAATGTTAGCTGGAAGCTAACTGGCGCCCGGGAAGCATTGAGCATCAACCTAGCCACATTTGAAAAACCCCTTCGGAAGCTCACCTTTGCTGATCTTCTTGAAGCCACCAATGGCTTCCACAATGACAGCCTTATTGGCTCTGGTGGCTTTGGCGATGTGTACAGAGCTCAGCTGAAAGATGGAAGCATAGTAGCCATCAAGAAGCTGATACATATAAGCGGACAGGGGGACCGGGAATTCACGGCTGAAATGGAAACCATTGGGAAAATCAAGCACCGAAACCTCGTCCCTCTCTTGGGCTACTGCAAGGTGGGGGAGGAACGGCTCTTGGTGTATGAATACATGAGGTTTGGAAGCCTGGAAGACATCCTACATGACCGGAAAAAGGCTGGGATCAAGCTGAATTGGGCAGCTAGGAGGAAGATTGCCATTGGAGCTGCAAGGGGATTAGCCTTCCTCCACCATAACTGCATCCCCCACATCATCCACCGCGACATGAAATCGAGCAACGTCCTGCTTGATGAAAACTTTGAAGCCAGAGTCTCTGACTTCGGAATGGCTAGGCTAATGAGCGCAATGGACACCCATTTGAGTGTCAGCACGCTTGCAGGCACCCCCGGCTATGTCCCTCCCGAGTACTACCAGAGCTTTAGATGTTCTACAAAAGGCGATGTCTACAGTTATGGAGTAGTTCTGCTAGAGCTTCTAACAGGGAAGCAACCAACAGATTCAGCTGATTTTGGGGATAACAACCTTGTGGGGTGGGTGAAGCAGCATGCCAAACTGAGAATAAGCGATGTATTCGATCCTGAGCTCATGAAGGAGGACCCCAACCTGGAGATTGAGCTCTTGCAACACTTAAAGGTAGCGTGTGCCTGTTTGGACGATCGGCCATGGCGGCGGCCCACCATGATTCAAGTCATGGCGATGTTCAAGGAGATCCAAGCAGGGTCTGGGCTGGACTCTGCATCAACCATAGCCACCGAGGATGGAGGCTTCAGTGCAGTGGAAATGGTAGAAATGAGCATAAAAGAAGTCCCGGAATTCAGCAAGCAGTAG 3618 0.4945 MACELQLTGFRGPKMKAFSRSYSQTYLFFLFLFMSFLCVALAAVSKDATLLLSFKRSLPNPGVLQNWEEGRDPCYFTGVTCKGGRVSSLDLTSVELNAELRYVATFLMGIDRLEFLSLQSTNLTGAVSSVSGSRCGALLSSLDLANNTVSGSISDLENLVSCSSLKSLNLSRNNLEFTAGRRDSGGVFTGLEVLDLSNNRISGENVVGWILSGGCRQLKSLALKGNNANGSIPLSGCGNLEYLDVSFNNFSAFPSLGRCSALNYLDLSANKFSGEIKNQLAYCQQLNHLNLSSNHFTGAIPALPTANLEYVYLSGNDFQGGIPLLLADACPTLLELNLSSNNLSGTVPSNFQSCSSLVSIDISRNNFSGVLPIDTLLKWTNLRKLSLSYNNFVGSLPESLSKLMNLETLDVSSNNFSGLIPSGLCGDPRNSLKELHLQNNLFTGRIPEALSNCSQLVSLDLSFNYLTGTIPSSLGSLTKLQHLMLWLNQLHGQIPEELMNLKTLENLILDFNELTGPIPDGLSNCTNLNWISLSNNRLSGEIPGWIGKLSNLAILKLGNNSFYGSIPPELGDCRSLIWLDLNTNHLTGTIPPALFKQSGNIAVGLVTGKSYVYIRNDGSKECHGAGNLLEYGGIREEEMDRISTRNPCNFTRVYKGRTNPTFNHNGSLIFLDLSYNMLGGSIPKELGTPYYLYILNLAHNNLSGAIPVELGGLKNVNILDFSYNRLQGTIPQSLSGLSMLNDIDLSNNNLSGTIPQSGQFLTFPNLSFANNSGLCGFPLSPCGGGPNSISSTQHQKSHRRQASLVGSVAMGLLFSLFCIFGLIIVAIETRKRRKKKDSTLDVYIDSNSHSGTANVSWKLTGAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYRAQLKDGSIVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMRFGSLEDILHDRKKAGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKQPTDSADFGDNNLVGWVKQHAKLRISDVFDPELMKEDPNLEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGLDSASTIATEDGGFSAVEMVEMSIKEVPEFSKQ* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1388 1205 SUPERFAMILY L domain-like 105 421 - -
Vvi7g1388 1205 CDD STKc_IRAK 898 1167 - -
Vvi7g1388 1205 SUPERFAMILY Protein kinase-like (PK-like) 878 1168 IPR011009 -
Vvi7g1388 1205 SMART serkin_6 892 1164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1388 1205 Pfam Protein kinase domain 892 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1388 1205 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 660 782 - -
Vvi7g1388 1205 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1014 1026 IPR008271 GO:0004672|GO:0006468
Vvi7g1388 1205 Pfam Leucine Rich repeats (2 copies) 380 419 IPR025875 -
Vvi7g1388 1205 FunFam Brassinosteroid LRR receptor kinase 968 1169 - -
Vvi7g1388 1205 PANTHER RECEPTOR-LIKE PROTEIN 55 467 1168 - -
Vvi7g1388 1205 Pfam Brassinosteroid receptor island domain 599 663 IPR045381 -
Vvi7g1388 1205 ProSiteProfiles Leucine-rich repeat profile. 239 260 IPR001611 GO:0005515
Vvi7g1388 1205 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 428 601 - -
Vvi7g1388 1205 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 212 427 - -
Vvi7g1388 1205 Gene3D Ribonuclease Inhibitor 51 782 IPR032675 -
Vvi7g1388 1205 Pfam Leucine rich repeat 503 561 IPR001611 GO:0005515
Vvi7g1388 1205 Pfam Leucine rich repeat 431 490 IPR001611 GO:0005515
Vvi7g1388 1205 Pfam Leucine rich repeat 692 750 IPR001611 GO:0005515
Vvi7g1388 1205 ProSiteProfiles Protein kinase domain profile. 892 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1388 1205 Gene3D - 604 664 - -
Vvi7g1388 1205 Pfam Leucine rich repeat N-terminal domain 46 81 IPR013210 -
Vvi7g1388 1205 Gene3D Phosphorylase Kinase; domain 1 853 967 - -
Vvi7g1388 1205 FunFam serine/threonine-protein kinase BRI1-like 2 853 967 - -
Vvi7g1388 1205 FunFam Serine/threonine-protein kinase BRI1-like 1 606 663 - -
Vvi7g1388 1205 SMART LRR_typ_2 403 426 IPR003591 -
Vvi7g1388 1205 SMART LRR_typ_2 574 597 IPR003591 -
Vvi7g1388 1205 SMART LRR_typ_2 713 737 IPR003591 -
Vvi7g1388 1205 SMART LRR_typ_2 237 259 IPR003591 -
Vvi7g1388 1205 SMART LRR_typ_2 477 501 IPR003591 -
Vvi7g1388 1205 SMART LRR_typ_2 549 573 IPR003591 -
Vvi7g1388 1205 SMART LRR_typ_2 188 213 IPR003591 -
Vvi7g1388 1205 ProSitePatterns Protein kinases ATP-binding region signature. 898 921 IPR017441 GO:0005524
Vvi7g1388 1205 SMART LRR_sd22_2 379 408 - -
Vvi7g1388 1205 SMART LRR_sd22_2 713 739 - -
Vvi7g1388 1205 SMART LRR_sd22_2 188 208 - -
Vvi7g1388 1205 Gene3D Transferase(Phosphotransferase) domain 1 968 1169 - -
Vvi7g1388 1205 SUPERFAMILY RNI-like 335 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1388 Vvi-Chr7 17969593 17973374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1388 51 1201 Receptor kinase-like Gene Family AT4G39400 68.362 0.0 1528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi7g1388 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1388 K13415 - vvi:100252647 2336.61