Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1386 ATGGAGCAGAAATCTCAAGAAAACGAGGTCAATGCTGCAATTCTCTGCGCCAATAACTGCGGATTCTTCGGAAGCGCCGCGACCAATAATCTCTGCTCCAAATGCTACAAAGAGTTTGTCATCAAGCAATCCAAGGAGGCTTCAGTTGTCGAGAATGAGAATAATACTGTTGGCGAAAACTCGGGTTCGGGAATCGAGGAAGGAGCCGCCGCGGGAAGCCCCGAAAAATGCCCTGCGAATAGGTGCAGCTTCTGTAGGAAGCGCGTGGGGTTGACGGGGTTCAAGTGCCGGTGTGGACAGACGTTTTGCTCTATGCACCGATACTCCGATAAACATAACTGTGTGTTTGATTACAAGAGTGCTGCGCAGGATGCAATAGCGAAGGCCAATCCGGTTGTGAAGGCCGATAAGATTGAGAAGATATGA 426 0.4977 MEQKSQENEVNAAILCANNCGFFGSAATNNLCSKCYKEFVIKQSKEASVVENENNTVGENSGSGIEEGAAAGSPEKCPANRCSFCRKRVGLTGFKCRCGQTFCSMHRYSDKHNCVFDYKSAAQDAIAKANPVVKADKIEKI* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1386 141 Gene3D - 59 137 IPR035896 -
Vvi7g1386 141 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vvi7g1386 141 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Vvi7g1386 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 51 - -
Vvi7g1386 141 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vvi7g1386 141 MobiDBLite consensus disorder prediction 51 77 - -
Vvi7g1386 141 SMART AN1_Zf_4 82 119 IPR000058 GO:0008270
Vvi7g1386 141 Gene3D - 1 58 - -
Vvi7g1386 141 Pfam AN1-like Zinc finger 82 119 IPR000058 GO:0008270
Vvi7g1386 141 FunFam Zinc finger AN1-type containing 6 50 137 - -
Vvi7g1386 141 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 141 - -
Vvi7g1386 141 SUPERFAMILY AN1-like Zinc finger 72 136 IPR035896 -
Vvi7g1386 141 ProSiteProfiles Zinc finger AN1-type profile. 76 122 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1386 Vvi-Chr7 17945927 17946352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1386 2 141 C2H2 Transcription Factor Family AT3G52800 39.053 3.20e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1386 - - vvi:100242410 275.789