Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1351 ATGGCAGAGGACGGCCTGCGGACTGGTGGGCTTTCTTCTGGTCTGGCAGTGATATTGAATGGTGGGGATAAGAGAGAGAGTTCATCCAAAAGCCACCTTGTTTCGTATTGTGATGAATTTGGCCACCAATCTGTGGAGCGAACTCTTGAACACATATTTGATCTTCCATACAAATCAATTAGTCCATTGAATGGTCCTGTCGATACTAATCTGATTCGTGCTATCATAAAGAATGACTTCTTAAGATTTTATATAAATCCAGATGATTTAGGTAGTAATAGAGATGGAGTGTATATTGATAAAAGCAGTGGGTCTAATACAGTTGCTATTGAAGAATCTAGCATCTGTGGTGATATTCGAATTATCAAGCCACCTTTGCTTTTAGAAAGTCTTGGCATGTTTAGTAGTGCAAGGGCCAATGTATGTGTGTGGAAAGGAAAATGGATGTATGAAGTGATTCTAGAAACTTCAGGCATACAGCAGCTTGGATGGGCAACACTTTCTTGCCCTTTCACTGACCACAAGGGTGTAGGGGATGCCGATGATTCATATGCATTTGATGGGAAAAGGGTTAGCAAATGGAATAAGGAAGCTGAGACATATGGTCAGTCATGGGTCGTTGGTGATGTCATTGGGTGTTGCATAGATTTGGACAATGATGAGATCTCATTCTATAGAAATGGTATGTCACTTGGGGTGGCATTTCATGGGATCCGTAAGATGGGGGCTGGAGTTGGATATTATCCTGCAATTTCGCTTTCACAAGGTGAGCGGTGTGAGTTGAATTTTGGGGGTCGCCCCTTTAAATACCCTATTGAAGGTTTCCTTTCCCTTCAGGCTCCTCCATCTGCAAACTCACTTGCTACTTGCTTGTTACGGTGCTTATCAAGGTTGGTGGAGATGCAATGCATGGAAAGAGCTGAATTCAATTCTGTTGAGAAACTGAGAAGATTGAAGAGGTTTGTGCCACTTGAAGAACTTTTTAACCCTGTCTCTCGTGGAATATATAAGGAGTTCTTTGCTTTGCTAGATGCAGAAAGGGGGAGCATGGAATATGTAGGATGGGGTTCGCTTTTGTCCTTCATGATGGAAGTGTTTGGGATGCAGGCACCACATGATTATACAAGCTTAGATAAAGTTCTTGATCTCCTTCTAGAGTTTCAGGGGTCAAATTTGATATTGGAGCAAGTTATAAATGCCCTATCATGCAGTTGCAAGACAGCATCCTTGGTTCTAACAGAGTGCCCATACACAGGGCCATATTCTTATCTTGCATTGGCATGTCACATGTTAAGACGGGAAGAATTGATGTTACTTTGGTGGAAGTCATCAGATTTTGAATTATCATTCGAAGGGTTTCTATCATGTAAAAGTCCAAATAAGCAGGATCTTCAGTGCATGATGCCTTCTGTCTGGTGGCCTGGTTCATGTGAGGATGTGTCATATGAAAGTAACATGATGTTGACAACTACAGCTTTATCTGGAGCAGTCAGTAAGATTGAGGAGAAGCATAGGGACCTCTGTCGCTTAGTCATGCAATTCATTCCACCTACAATGCCACTTCAGTTGCCTGGTTCAGTGTTTAGGACATTTTTGCAGAATCTTCTATTGAAGAATAGAGGAGCAGACCGCAATGTACCACCTCCTGGAGTTTCAAGTAACTCTGTCATTGTTTCTTTGTACACAGTGATACTCCATTTTTTATCTGAAGGGTTTGCTGTGGGGGACAACTGTGGGTGGATGAAGGGCTGTGGAATTAATGCTGGATCTGATGTTGGTTTTCTTCATAGAGGTGGCCAACAAACTTTTCCCATGGGTTTGTTTCTTAAAAGTGATCCTCATCGAAGTGACATTTCTAGGCTTGGGGGATCATTTAGTCATCTGTCGAAATCACATCCTGTAACTGACCAGGAAGCAGAAGTGGTTAGGTGGGAGGAAGGCTGTATGGATGATGAAGAAACCAGAGTAACTCATCTTACTAGGCAGCACCCCTGTTGTTGTTCAAGTTATGATGTTGATTTCACCAGAGTCTCAAAGGATCCAATCAGATATACTGCTAAAGGTTCTCGGGGCCATTGCAGCACTAGTCCAGAGACATCTGCTCAAGTTGCTGCAGAATGCAGTGCAGGAACTCTGAATGATGAGATAGCGGATAAACCCAGCTCAAGTGATCAATCTGAACCTGAGTTTGATTATCGGCCAGTGCAACATATGAGGATTGTACCAAGGGAAAGTAATTTTTCTACTGCAACTTTAAGAGAAGAGGAACTTCTTGATGCTATGTTGTTGTTGTATCATATAGGTCTTGCACCAAGTTTTAAGCAGGCATCACATTACATGTCTCATCAATCGCAATCTATATCTCTTCTTGAAGAAACTGATAAACAAATAAGAGATCGTGCTTATGGTGAACAACTAAAGCATTTAAAGGAAGCTCGCAGTATTTATCGGGAAGAAGTTATTGATTGTGTAAGACATTGTACATGGTACCGCATCTCTCTGTTTTCTCGCTGGAAGCAAAGAGGAATGTATGCAGCATGCATGTGGAGTGTTCAATTGCTTCTGGTTCTTAGCAAAATGGATTCCATATTCTGTTATATCCCTGAATTTTATGTGGAAGCTCTGGTTGACTGCTTCCATGTTCTGCGCAAGAGTGATCCTCCATTTGTCCCTTCGGCAATACTCATCAAGCAAGGACTTGCTTCATTCGTAACTTTTGTTGTTACCCACTTCAACGACCCAAGGATATCTAGTGCAGATCTGAGGGATCTTCTTCTCCAATCTATTTCAGTCCTGGTACAATACAAGGAATTTTTGGCTGCTTTTGAGAGCAATATTGTAGCCACCCAAAGGATGCCAAAAGCATTGTTGTCTGCATTTGATAACCGATCCTGGATTCCTGTAACAAATATACTTCTGCGTTTGTGCAAGGGCTCTGGCTTTGGTTCTTCAAAGCATGGTGAATCATCATCATCATCTTTTGTTTTCCAGAAATTGCTGCGGGAGGCTTGCATCGTCGATGACGAATTGTTCTCTGCTTTCCTCAATCGCCTGTTTAACTATCTCAGCTGGACAATGACTGAATTCTCAGTTTCAGTTCGAGAAATGCAAGAAAAACACCGGGTTTTGGAGTTTCAGCAACGGAAATGCAGTGTAATATTTGACCTCTCATGTAATCTTGCGAGGGTATTGGAGTTCTGTACCCGTGAGATACCTCAAGCATTCCTGACAGGAGCAGATACAAACCTTCGTAGGTTAACTGAGTTGGTTGTTTTTATTCTGAACCACATAACTTCAGCTGCAGATGCTGAATTTTTTGACTTATCCCTCAGACGCCATGGTCAATACCCAGAGAAAGTAAATCGAGGCATGATTTTATCACCTCTTGCTGGGATCATCTTGAATTTGTTGGATGCTAGTGCACAGACAGAATGCAAGGCACAGAATGATGTTGTTGGGGTGTTTGCAAGTATGGACTGTCTTGATACTGTTCATTGTGGATTCCAGTACTTGCTAGAATACAACTGGGCTGGATCCTTTAGAGGAGACACGTATCTTGCTAAACTCGCCCAGCTAGAACAATTCTCGAGTCTCCTTATCAGCCAAACCAGGTCATGGGAAGTGGAGAGCACAGCCTGTGATGGTGAAACAGATGGTGATGATGTCGTGTGCTGCATCTGTTATGCTTGTGAAGCAGATGCCCGGTTTGTCCCCTGTTCCCATACATCTTGCTTTGGCTGCATAACCAGACATCTTCTTAACTGCCAGAGATGCTTCTTTTGCAATGCAACTGTTGCAGAAGTTGTTAGAATGGATGGGAAGACAGCTTAA 3831 0.425 MAEDGLRTGGLSSGLAVILNGGDKRESSSKSHLVSYCDEFGHQSVERTLEHIFDLPYKSISPLNGPVDTNLIRAIIKNDFLRFYINPDDLGSNRDGVYIDKSSGSNTVAIEESSICGDIRIIKPPLLLESLGMFSSARANVCVWKGKWMYEVILETSGIQQLGWATLSCPFTDHKGVGDADDSYAFDGKRVSKWNKEAETYGQSWVVGDVIGCCIDLDNDEISFYRNGMSLGVAFHGIRKMGAGVGYYPAISLSQGERCELNFGGRPFKYPIEGFLSLQAPPSANSLATCLLRCLSRLVEMQCMERAEFNSVEKLRRLKRFVPLEELFNPVSRGIYKEFFALLDAERGSMEYVGWGSLLSFMMEVFGMQAPHDYTSLDKVLDLLLEFQGSNLILEQVINALSCSCKTASLVLTECPYTGPYSYLALACHMLRREELMLLWWKSSDFELSFEGFLSCKSPNKQDLQCMMPSVWWPGSCEDVSYESNMMLTTTALSGAVSKIEEKHRDLCRLVMQFIPPTMPLQLPGSVFRTFLQNLLLKNRGADRNVPPPGVSSNSVIVSLYTVILHFLSEGFAVGDNCGWMKGCGINAGSDVGFLHRGGQQTFPMGLFLKSDPHRSDISRLGGSFSHLSKSHPVTDQEAEVVRWEEGCMDDEETRVTHLTRQHPCCCSSYDVDFTRVSKDPIRYTAKGSRGHCSTSPETSAQVAAECSAGTLNDEIADKPSSSDQSEPEFDYRPVQHMRIVPRESNFSTATLREEELLDAMLLLYHIGLAPSFKQASHYMSHQSQSISLLEETDKQIRDRAYGEQLKHLKEARSIYREEVIDCVRHCTWYRISLFSRWKQRGMYAACMWSVQLLLVLSKMDSIFCYIPEFYVEALVDCFHVLRKSDPPFVPSAILIKQGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYKEFLAAFESNIVATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFGSSKHGESSSSSFVFQKLLREACIVDDELFSAFLNRLFNYLSWTMTEFSVSVREMQEKHRVLEFQQRKCSVIFDLSCNLARVLEFCTREIPQAFLTGADTNLRRLTELVVFILNHITSAADAEFFDLSLRRHGQYPEKVNRGMILSPLAGIILNLLDASAQTECKAQNDVVGVFASMDCLDTVHCGFQYLLEYNWAGSFRGDTYLAKLAQLEQFSSLLISQTRSWEVESTACDGETDGDDVVCCICYACEADARFVPCSHTSCFGCITRHLLNCQRCFFCNATVAEVVRMDGKTA* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1351 1276 Pfam Ubiquitin elongating factor core 768 960 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Vvi7g1351 1276 CDD SPRY_RNF123 136 264 IPR035773 -
Vvi7g1351 1276 SUPERFAMILY RING/U-box 1217 1268 - -
Vvi7g1351 1276 Pfam SPRY domain 147 265 IPR003877 GO:0005515
Vvi7g1351 1276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1217 1272 IPR013083 -
Vvi7g1351 1276 FunFam E3 ubiquitin-protein ligase RKP 117 291 - -
Vvi7g1351 1276 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 136 IPR045737 -
Vvi7g1351 1276 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 23 1273 IPR045129 GO:0004842
Vvi7g1351 1276 ProSiteProfiles B30.2/SPRY domain profile. 76 268 IPR001870 -
Vvi7g1351 1276 ProSiteProfiles Zinc finger RING-type profile. 1224 1258 IPR001841 -
Vvi7g1351 1276 Gene3D - 110 290 IPR043136 -
Vvi7g1351 1276 FunFam E3 ubiquitin-protein ligase RNF123 1215 1272 - -
Vvi7g1351 1276 SUPERFAMILY Concanavalin A-like lectins/glucanases 129 271 IPR013320 -
Vvi7g1351 1276 CDD RING-HC_RNF123 1223 1265 - -
Vvi7g1351 1276 SMART SPRY_3 145 267 IPR003877 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1351 1208 1269 C3H Transcription Factor Family AT1G62370 37.500 1.34e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1351 K12169 - vvi:100250977 2571.19