Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1348 ATGACAGGGAAAAGAGCTCAAAATAGCCCCGTCGGCAGCCCATCTTCCGACACTTCTTCTTCGAAGGAGCAAGACCGCTTCCTCCCCATCGCCAACGTGAGCCGGATCATGAAGAAATCGCTCCCGGCCAACGCAAAGATATCGAAAGAAGCCAAGGAGACCGTCCAGGAATGCGTGTCCGAGTTCATAAGCTTCATCACCGGCGAAGCCTCCGACAAATGCCAGCGCGAGAAGAGGAAAACCATCAATGGCGATGATCTTCTCTGGGCCATGACCATGCTCGGATTCGAAAACTACGTTGGGCCCTTGAAGGTTTACCTCAGCAAGTACAGAGAGACGGAAGGAGAAAAGAACAACGTCGTCGCTAGACATGAAGACCAGTCTGCTGTATTCAACTCAAACCAGATGAACAAAGCTAATAAATCTATTCCTATCGACCCAGATTTTCAAGGTTTTAATGGTGGGTTTTATTCACTTGGGCCACAAATGAATGGAGACGAAGCTGCAGCAGCCATGGGATATGGCGACAGCCTGGTGACTGGAGCTTTTAATCGGAGTAGAATCAGAGAAAATGATGGAAATGGTAATAGAATTATGGCAAGCTACTCATCCCCACAATGGAGTTGA 627 0.4848 MTGKRAQNSPVGSPSSDTSSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTMLGFENYVGPLKVYLSKYRETEGEKNNVVARHEDQSAVFNSNQMNKANKSIPIDPDFQGFNGGFYSLGPQMNGDEAAAAMGYGDSLVTGAFNRSRIRENDGNGNRIMASYSSPQWS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1348 208 Gene3D Histone, subunit A 14 143 IPR009072 GO:0046982
Vvi7g1348 208 FunFam Nuclear transcription factor Y subunit B-3 16 141 - -
Vvi7g1348 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Vvi7g1348 208 MobiDBLite consensus disorder prediction 1 25 - -
Vvi7g1348 208 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi7g1348 208 SUPERFAMILY Histone-fold 24 149 IPR009072 GO:0046982
Vvi7g1348 208 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vvi7g1348 208 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vvi7g1348 208 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Vvi7g1348 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 135 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1348 Vvi-Chr7 17548668 17549294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1348 6 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.230 5.22e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi7g1348 CBFD_NFYB_HMF 5.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1348 K08065 - vvi:100245836 403.675