Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1347 ATGAAAATGAGAATTTTCCGGCCCTTTTCCCTCCTCCTCCATGAAATGAAATTCGCTGCAAATATGAATTCAAATCCTGCGCTGTTCAATCTTCTTTCTCTCTCCTCCAAACGCTTATCCACTCTCTCTTCTTCACCGAACCCCATCATCGTCAACTACCTTATTCAAACATTTGGCTTCTCCCAAACCCTAGCCAACTCAATCTCAAACCGCTTCTGGTGGGCCAAATCCACAGAAAACCCCCAATCTGTAATTCATTTTCTCAGGGACCTCGGATTCTCCGAAGCCCACATTCGAACTTCGGTCCGTGTTGGGCCCCAGATACTGTTCTCCGATATCGATAAGACCCTCAAACCGAAGGTCCAGTTCTTTGAGCAACTGGGTCTTGTGGGTGCCGACTTGGGTAAGTTCATTTCCAAGAATTCTAAGGTTTTGACTATTAGTTTGGAGAAAAAATTGGTACCCTGCATTGAAATTCTCAAGAAAACGCTCTCAGATGATGAAAACAATGGTGATTTGATTCGTGTTTTGCGGAGGTGCACTTGGGTCTTGTCCAGAAACCCTGAGTTGTTGCTTTCCAACATTGCGTTCCTGGAGAGCTGTGGGATTGTTGGGTCTCAGCTCTCAATGCTGTTGACGCGGCAGCCACGACTATTTGTTATAAAGCAATCCACTCTTAAGGACCTTGTTTCTCGGGCTGTAGACATGGGGTTTTCAATTGAATCGAGGATGTTGGTTTATGCTCTGTATACTATTAGCTGCCTGCGGGATGAGACTTTAAGGAAAAAGTTTGAATTGTTTCGAAGTTGGGGGTTTACAGAACAAGAATGCATCGAAATGTTCAGGAGGACACCAGGGTTGCTTAGGGCTTCCGAGGAGAAATTAAAGCTGGGAATGGAGTTTTTCATGAACACCATGAAGTTTGAAAAGACACTGTTAGTTCACAGGCCTACGATCTTGATGCTCAGCATGGAGGATCGGGTCATTCCTCGATACAGGGTTTTACAGATTCTGAAGTCAAAGAGGCTGTTGAAGAGGGAGCCGAGTTTTATTAATGTCTTGAGTTTGACAGATGAAGAATTTCTGGACAAGTTTATATCGAGGTTTGCAGATGATGCTGAGGAATTGTTGGTAGCTTACAAGGGTCATACTTTACAGGAAGTGGATGAATGA 1173 0.4416 MKMRIFRPFSLLLHEMKFAANMNSNPALFNLLSLSSKRLSTLSSSPNPIIVNYLIQTFGFSQTLANSISNRFWWAKSTENPQSVIHFLRDLGFSEAHIRTSVRVGPQILFSDIDKTLKPKVQFFEQLGLVGADLGKFISKNSKVLTISLEKKLVPCIEILKKTLSDDENNGDLIRVLRRCTWVLSRNPELLLSNIAFLESCGIVGSQLSMLLTRQPRLFVIKQSTLKDLVSRAVDMGFSIESRMLVYALYTISCLRDETLRKKFELFRSWGFTEQECIEMFRRTPGLLRASEEKLKLGMEFFMNTMKFEKTLLVHRPTILMLSMEDRVIPRYRVLQILKSKRLLKREPSFINVLSLTDEEFLDKFISRFADDAEELLVAYKGHTLQEVDE* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1347 390 Pfam mTERF 85 240 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 Pfam mTERF 172 266 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 Pfam mTERF 255 362 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 PANTHER CGI-12 PROTEIN-RELATED 49 368 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 FunFam Mitochondrial transcription termination factor-like 149 373 - -
Vvi7g1347 390 Gene3D Transcription termination factor 3, mitochondrial 172 372 IPR038538 -
Vvi7g1347 390 Gene3D Transcription termination factor 3, mitochondrial 55 171 IPR038538 -
Vvi7g1347 390 SMART mt_12 174 204 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 SMART mt_12 209 239 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 SMART mt_12 243 273 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 SMART mt_12 135 167 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 SMART mt_12 278 309 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 SMART mt_12 310 341 IPR003690 GO:0003690|GO:0006355
Vvi7g1347 390 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1347 Vvi-Chr7 17540950 17542122 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g1347 mTERF 2.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1347 K15032 - vvi:100268158 750.355