Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1346 ATGGGTAGGGTTTTTTGTGCTCTCGGAGAAATGAACCTCACTCCCATTTTTTTAACTCTCTGGTGGGTTTTCTTTGCTGGAGTGGGTTCCGGCGTGGGAGTTCTCGTCGCCGGGGATGGGTCCGGCGATCTGCGATCGCTGCTGGAGTTCAAGAAAGGGATCGAGGTAGATCCCTTGGGAAAGGTGCTGAACTCGTGGAACCGGTCGGGAGCGGATCCGGAGAAGTGTCCTCGGGGCTGGCACGGCGTCGTGTGTGATGAATCTGAGTTGTCCGTGGTCGCCATTGTTCTCGACCGGCTTGGGCTGGAGGGGGAGCTCAAGTTCAATACTTTGCTTGGGCTGAAAATGCTGAGGAATCTGAGTCTCGCTGGGAACTCGTTCACCGGCAGGCTGGTTCCGGTGATGGGGTCGATGAGTTCTTTGGAGGTTTTGGATCTGTCCGGGAACCGTTTCTACGGGCCGATCCCGGCTCGAATCAGCGAGCTTTGGAATTTAAATTATGTGAATTTGTCCAATAATAATTTGAAGGGTGGATTTCCTGGTGGATTCCATAATCTTCAGCAGTTGAAAACTCTAGATTTGCATTCGAATGAGATCTCTGGCGATTTCGGTACTCTGCTGTCGGAGTTTCGAAATGTTGAGTATGTTGACTTGAGTCACAATAAATTCTATGGAGGAATTTCCGCTGGCAAGGAGAATGTTTCGAGCTTGGCGAACACTGTGCAATATGTGAATTTGAGTTACAATGACCTCAGCGGGGGTTTCTTTGATGATGAATCGATTGTTTTGTTCCGGAACTTGCAAGTTTTGGATTTGGGTAATAATCAGATTCGTGGGGAGCTCCCTTCATTTGGGTCATTGCCAAATCTCCAAGTTCTGAATCTAAGGAATAATCAGTTGTATGGGTCGATACCAAAAGGGTTGTTGGAGAGTTCCATGCCTTTAACAGAACTGGATCTCAGTGGCAATGGGTTTACAGGTCCAATTGATGAAATCAACTCTTCCAATCTGAATATTTTGAATCTTTCATCAAACGGGCTATCAGGTTCTTTGCCTTCTTCTTTAAGAAGATGTTTAACGGTGGATTTGAGCAGAAATATGATATCTGGTGACATATCCATTATGCAGAGTTGGGAAGCCACTTTGGAAGTTCTCGATTTGAGTTCAAACAAGTTGACTGGAAGCTTTCCAAACCTGACTTCTCAATTTGAGAGACTGACTACACTTAAACTTGGAAACAATTCTTTAGTAGGTATTCTGCCTTCTGGATTGGGAGCCTATTCAAGACTGTCTGCAGTTGATCTCAGTTCTAACAATCTTAATGGACCTATTCCAAGTAGTTTCTTCACTTCAACAACCTTGACAAGCCTGAATCTTTCAGGAAATAATTTTGTTGGGTCAATTCCTTTTCAAGGCTCGCATGAAAGTGAGTTATTAGTGCTACCTTCTTATCTGCCGCTAGAGTCTCTTGATCTCTCCCGTAATTTCTTAACAGGCAACTTGCCTTCGGACATAGGTAACATGGGGAGGCTTAAGTTGTTGAATCTTGCAAAGAACAGCTTATCTGGAGAGCTACCAAATGAAATAAGCAAACTTAGTGACCTGGAGTACCTTGATCTGTCAAGCAACAACTTTAGGGGTGAGATCCCTGATAAGATTCCATCAAGTGTCAAAGTGTTCAATGTGTCCCATAATGATCTATCCGGTCATGTTCCAGAAAACTTGAGAAGGTTCCCTATGACTTCATTTCGCCCTGGAAATGAGTTGCTAATCCTCCCAGAAGGCATGCCAGCAGAAAATACTATTCCTGGTCCAATTCATGACAGTGGAAACCATCATAGTTCAAAGGCTAGCATCAGAGTGGCAATCATTGTCGCCTCAGTTGGGGCTGCTGTGATGATTGCTTTTGTTTTACTGGCTTATTATCGAGCACAACTTCAAGATTTTCATGGAAGAAGTGGATTTAGTGGCCAAACTTCTGAGCGAGATGTTAAGTTGGGAAGGTTTACCCGGCCTTCCCTTTTCAAATTCCACACAAATGATGAACCTCCCGCAACTTCATTGAGCTTTTCTAATGATCATTTGCTAACTTCAAATTCAAGATCATTGTCTGGGCAGACTGAGCATGTAACTGAAATTATTGAGCATCCTTTACCTGGGGGAGCCTCAGCTAGTTCAGCATCTACAAATCCCAATGTGTTAGATAATCATCCCACAACATCTGGAAGGAAGTCCTCCCCAGGGTCCCCATTATCTTCATCACCTCGTTTTATTGAGGCAACTGAGCAACATGTGAGGTTGGATGTGTACTCTCCAGACCGGTTAGCTGGAGAACTGTTCTTCCTGGACGGTTCACTAGCATTCACTGCTGAGGAGTTATCTCGAGCTCCTGCAGAAGTTCTTGGCAGAAGCAGCCATGGTACTCTATACAAAGCTACTCTAGATAGTGGGCACATGTTGACTGTCAAATGGCTGCGGGTGGGTCTGGTCAAACATAAGAAAGAATTTGCTAAAGAAGTTAAAAGAATTGGCTCTATAAGACATCCAAATGTTGTTCCATTACGAGCATACTACTGGGGGCCCAGAGAACAAGAGAGGCTTGTCTTAGCAGATTACATTCAGGGGGATAGCTTGGCCTTGCATCTTTATGAGACCACCCCTCGCAGATACTCCAAGTTATCCTTCAGTCAAAGGCTAAAACTTGCCGTGGATGTTGCTCAGTGTCTGTCATACCTTCATGATAGAGGCCTGCCCCATGGGAACCTGAAGCCAACGAATATACTCTTGGCAGGCCTTGATCTTCAAGCTCGCCTCACGGATTATGGTCTCCACCGCCTGATGACACCAGCTGGCATTGGCGAGCAGATTCTAAATTTGGGAGCACTTGGATACCGTGCTCCAGAACTTGCCATGGCAGGCAAACCAGTTCCATCATTCAAGGCTGATGTGTATGCATTTGGAGTCATCTTAATGGAATTGTTAACCAGAAGAAGCGCGGGTGACATAATATCCGGGCAGTCGGGTGCTGTTGATCTTACAGATTGGGTTCGGTTGTGTGATCAAGAAGGGCGAGGAATGGATTGTTTTGATAGAGATATTGCAGATGGGGAGGAACCCTCAAAAGCAATGGATGAATTGCTTGCTGTATCGCTCAAGTGTATTCTACCTGTTAATGAGAGGCCTAACATCAGACAAGTCTGTGACGATCTCTGTTCAATATCTATTTGA 3228 0.4514 MGRVFCALGEMNLTPIFLTLWWVFFAGVGSGVGVLVAGDGSGDLRSLLEFKKGIEVDPLGKVLNSWNRSGADPEKCPRGWHGVVCDESELSVVAIVLDRLGLEGELKFNTLLGLKMLRNLSLAGNSFTGRLVPVMGSMSSLEVLDLSGNRFYGPIPARISELWNLNYVNLSNNNLKGGFPGGFHNLQQLKTLDLHSNEISGDFGTLLSEFRNVEYVDLSHNKFYGGISAGKENVSSLANTVQYVNLSYNDLSGGFFDDESIVLFRNLQVLDLGNNQIRGELPSFGSLPNLQVLNLRNNQLYGSIPKGLLESSMPLTELDLSGNGFTGPIDEINSSNLNILNLSSNGLSGSLPSSLRRCLTVDLSRNMISGDISIMQSWEATLEVLDLSSNKLTGSFPNLTSQFERLTTLKLGNNSLVGILPSGLGAYSRLSAVDLSSNNLNGPIPSSFFTSTTLTSLNLSGNNFVGSIPFQGSHESELLVLPSYLPLESLDLSRNFLTGNLPSDIGNMGRLKLLNLAKNSLSGELPNEISKLSDLEYLDLSSNNFRGEIPDKIPSSVKVFNVSHNDLSGHVPENLRRFPMTSFRPGNELLILPEGMPAENTIPGPIHDSGNHHSSKASIRVAIIVASVGAAVMIAFVLLAYYRAQLQDFHGRSGFSGQTSERDVKLGRFTRPSLFKFHTNDEPPATSLSFSNDHLLTSNSRSLSGQTEHVTEIIEHPLPGGASASSASTNPNVLDNHPTTSGRKSSPGSPLSSSPRFIEATEQHVRLDVYSPDRLAGELFFLDGSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAKEVKRIGSIRHPNVVPLRAYYWGPREQERLVLADYIQGDSLALHLYETTPRRYSKLSFSQRLKLAVDVAQCLSYLHDRGLPHGNLKPTNILLAGLDLQARLTDYGLHRLMTPAGIGEQILNLGALGYRAPELAMAGKPVPSFKADVYAFGVILMELLTRRSAGDIISGQSGAVDLTDWVRLCDQEGRGMDCFDRDIADGEEPSKAMDELLAVSLKCILPVNERPNIRQVCDDLCSISI* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1346 1075 ProSiteProfiles Leucine-rich repeat profile. 381 403 IPR001611 GO:0005515
Vvi7g1346 1075 ProSiteProfiles Protein kinase domain profile. 795 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1346 1075 MobiDBLite consensus disorder prediction 717 755 - -
Vvi7g1346 1075 FunFam Leucine-rich repeat receptor-like protein kinase 780 872 - -
Vvi7g1346 1075 Pfam Leucine Rich repeat 312 327 IPR001611 GO:0005515
Vvi7g1346 1075 Pfam Leucine Rich repeat 451 465 IPR001611 GO:0005515
Vvi7g1346 1075 MobiDBLite consensus disorder prediction 722 755 - -
Vvi7g1346 1075 Pfam Protein kinase domain 799 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1346 1075 Pfam Leucine Rich repeats (2 copies) 266 304 IPR025875 -
Vvi7g1346 1075 Gene3D Phosphorylase Kinase; domain 1 778 872 - -
Vvi7g1346 1075 FunFam Nuclear pore complex protein NUP107 40 205 - -
Vvi7g1346 1075 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 258 481 - -
Vvi7g1346 1075 PANTHER OS07G0626500 PROTEIN 38 117 - -
Vvi7g1346 1075 Gene3D Transferase(Phosphotransferase) domain 1 874 1075 - -
Vvi7g1346 1075 ProSiteProfiles Leucine-rich repeat profile. 266 288 IPR001611 GO:0005515
Vvi7g1346 1075 SMART LRR_typ_2 138 162 IPR003591 -
Vvi7g1346 1075 SMART LRR_typ_2 403 426 IPR003591 -
Vvi7g1346 1075 SMART LRR_typ_2 532 556 IPR003591 -
Vvi7g1346 1075 SMART LRR_typ_2 186 212 IPR003591 -
Vvi7g1346 1075 SMART LRR_typ_2 287 311 IPR003591 -
Vvi7g1346 1075 SMART LRR_typ_2 264 286 IPR003591 -
Vvi7g1346 1075 Pfam Leucine rich repeat N-terminal domain 43 86 IPR013210 -
Vvi7g1346 1075 SUPERFAMILY Protein kinase-like (PK-like) 798 1070 IPR011009 -
Vvi7g1346 1075 Pfam Leucine rich repeat 487 545 IPR001611 GO:0005515
Vvi7g1346 1075 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Vvi7g1346 1075 PRINTS Leucine-rich repeat signature 382 395 - -
Vvi7g1346 1075 PRINTS Leucine-rich repeat signature 532 545 - -
Vvi7g1346 1075 FunFam Leucine-rich repeat receptor protein kinase EMS1 482 574 - -
Vvi7g1346 1075 SUPERFAMILY RNI-like 119 567 - -
Vvi7g1346 1075 Gene3D Ribonuclease Inhibitor 42 228 IPR032675 -
Vvi7g1346 1075 FunFam Pollen receptor-like kinase 1 873 1075 - -
Vvi7g1346 1075 Gene3D Ribonuclease Inhibitor 231 600 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1346 Vvi-Chr7 17531772 17539554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1346 382 573 Receptor kinase-like Gene Family AT5G01890 37.688 8.78e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi7g1346 Pkinase 5.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1346 - - vvi:100262709 1988.39